vOTU vOTU-110893

vOTU: vOTU-110893

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-110893
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00206 → vSUBFAM-01186 → vGENUS-01151 → vOTU-110893
Host lineage	Bacteria → Patescibacteria → Saccharimonadia → Saccharimonadales → Nanosynbacteraceae → Nanosynbacter → Nanosynbacter sp007845355
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1489081
Biosample ID	N/A
Genome length (bp)	25,470 bps
CheckV completeness	77.30% (Medium-quality)
CDS count	41
CDS density	89.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Patescibacteria → Saccharimonadia → Saccharimonadales → Nanosynbacteraceae → Nanosynbacter → Nanosynbacter sp007845355	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1489081_2	phrog_1194	71.8	8.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1489081_2	1229517.AMFD01000023_gene1305	53.9	0.000000144	N/A	N/A
structural_annotation	UHGV-1489081_2	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_3	phrog_35723	227.5	0	N/A	unknown function
UniRef90	UHGV-1489081_3	UniRef90_UPI00135AD929	424.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1489081_3	650150.ERH_0621	411.0	0	tape measure	N/A
Pfam	UHGV-1489081_3	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1489081_3	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1489081_3	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1489081_4	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_5	phrog_158	67.4	2.6e-19	major tail protein	tail
UniRef90	UHGV-1489081_5	UniRef90_UPI000210B507	136.0	2.17e-38	phage tail tube protein	N/A
eggNOG-mapper	UHGV-1489081_5	650150.ERH_0618	136.0	3.63e-39	Phage tail tube protein	N/A
Pfam	UHGV-1489081_5	PF16461	N/A	N/A	Lambda phage tail tube protein, TTP	Phage_TTP_12
structural_annotation	UHGV-1489081_5	PF16461,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489081_6	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_7	phrog_5	98.5	7.5e-29	tail completion or Neck1 protein	connector
UniRef90	UHGV-1489081_7	UniRef90_A0A7W4E728	76.6	0.00000000000000331	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1489081_7	1499683.CCFF01000014_gene3905	65.1	0.0000000000254	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1489081_7	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1489081_7	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1489081_7	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
Pfam	UHGV-1489081_8	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1489081_8	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_9	phrog_132	53.8	0.0000000000000029	head-tail adaptor	connector
UniRef90	UHGV-1489081_11	UniRef90_A0A0M2NI16	241.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1489081_11	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_12	phrog_172	102.2	6.2e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-1489081_12	UniRef90_UPI0004868D22	69.7	0.0000000000143	N/A	N/A
eggNOG-mapper	UHGV-1489081_12	1211844.CBLM010000016_gene1492	69.7	0.00000000000239	N/A	N/A
Pfam	UHGV-1489081_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1489081_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_14	phrog_115	278.5	0	minor head protein	head and packaging
UniRef90	UHGV-1489081_14	UniRef90_A0A7W4DSA2	205.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1489081_14	1209989.TepiRe1_1146	198.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1489081_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1489081_14	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
NCBIFam	UHGV-1489081_14	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1489081_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489081_14	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_15	phrog_64	383.6	0	portal protein	head and packaging
UniRef90	UHGV-1489081_15	UniRef90_A0A7W4DHI0	361.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1489081_15	562981.HMPREF0428_01823	289.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1489081_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1489081_15	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1489081_15	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_16	phrog_30251	479.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1489081_16	UniRef90_UPI001F475B4B	448.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1489081_16	469618.FVAG_00794	432.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1489081_16	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1489081_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489081_16	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_20	phrog_29438	54.1	0.0000000000000026	N/A	unknown function
KOfam	UHGV-1489081_21	K00789	59.9	6.8e-18	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	N/A
PHROG	UHGV-1489081_21	phrog_1569	185.5	0	N/A	unknown function
UniRef90	UHGV-1489081_21	UniRef90_A0A3D1HM65	290.0	0	S-adenosylmethionine synthetase	N/A
eggNOG-mapper	UHGV-1489081_21	1120978.KB894081_gene101	288.0	0	S-adenosylmethionine synthetase, N-terminal domain	N/A
Pfam	UHGV-1489081_21	PF00438	N/A	N/A	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
COG	UHGV-1489081_21	COG0192	N/A	N/A	S-adenosylmethionine synthetase	N/A
structural_annotation	UHGV-1489081_21	PF01941,MF_00086,TIGR01034,COG0192	N/A	N/A	N/A	N/A
Pfam	UHGV-1489081_25	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
PHROG	UHGV-1489081_26	phrog_98	78.3	8.8e-23	N/A	unknown function
UniRef90	UHGV-1489081_26	UniRef90_A0A6M5FC65	124.0	6.45e-34	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1489081_26	864563.HMPREF9166_1270	75.9	0.00000000000000116	YopX protein	N/A
Pfam	UHGV-1489081_26	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1489081_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489081_27	PF16857	N/A	N/A	N/A	N/A
KOfam	UHGV-1489081_30	K24451	56.5	1.7e-20	zim; modification methylase	N/A
PHROG	UHGV-1489081_30	phrog_12517	309.8	0	N/A	unknown function
UniRef90	UHGV-1489081_30	UniRef90_A0A6J5LCN9	367.0	0	AdoMet_MTases domain containing protein	N/A
eggNOG-mapper	UHGV-1489081_30	1121097.JCM15093_3233	318.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1489081_30	MTase_II_00137	46.7	0.00000000000047	Type II methyltransferase	RM
Pfam	UHGV-1489081_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1489081_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1489081_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1489081_30	PF05401,PF02195,MF_01872,NF040850,TIGR00180,COG4123,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1489081_33	phrog_824	77.7	1.2e-22	N/A	unknown function
UniRef90	UHGV-1489081_33	UniRef90_A0A660LVV4	77.8	0.00000000000000105	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1489081_33	644966.Tmar_0031	53.9	0.000000338	VRR-NUC domain	N/A
Pfam	UHGV-1489081_33	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-1489081_35	K03111	116.3	4e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1489081_35	phrog_44	119.3	3.4e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489081_35	UniRef90_A0A857VC94	117.0	7.62e-31	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1489081_35	546271.Selsp_1347	93.2	1.79e-22	Single-strand binding protein family	N/A
Pfam	UHGV-1489081_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1489081_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1489081_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1489081_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1489081_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1489081_37	K01143	52.4	0.0000000000000091	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	N/A
PHROG	UHGV-1489081_37	phrog_149	115.9	3e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489081_37	UniRef90_A0A6J5N6Q9	153.0	3.85357e-43	Phage_rel_nuc, putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1489081_37	670292.JH26_14425	134.0	2.77e-36	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1489081_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1489081_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1489081_38	K07455	64.7	2e-18	recT; recombination protein RecT	N/A
PHROG	UHGV-1489081_38	phrog_148	66.5	3.6e-19	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1489081_38	PF03837	N/A	N/A	RecT family	RecT
COG	UHGV-1489081_38	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
PHROG	UHGV-1489081_41	phrog_2514	76.7	2.8e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1489081_41	596315.HMPREF0634_0383	59.7	0.0000000189	DnaD domain protein	N/A
COG	UHGV-1489081_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1489081	Yes	25,470	50	77	1