vOTU vOTU-111043

vOTU: vOTU-111043

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-111043
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-24394 → vOTU-111043
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0015364
Biosample ID	N/A
Genome length (bp)	28,067 bps
CheckV completeness	82.14% (Medium-quality)
CDS count	45
CDS density	90.23%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A	Total connections	52	Host agreement	71.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	26	Host agreement	76.92

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0015364_1	K01586	128.2	7.2e-38	lysA; diaminopimelate decarboxylase [EC:4.1.1.20]	N/A
UniRef90	UHGV-0015364_1	UniRef90_A0A7J0B325	237.0	0	Diaminopimelate decarboxylase	N/A
eggNOG-mapper	UHGV-0015364_1	1280698.AUJS01000007_gene996	268.0	0	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	N/A
Pfam	UHGV-0015364_1	PF00278	N/A	N/A	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Orn_DAP_Arg_deC
COG	UHGV-0015364_1	COG0019	N/A	N/A	Diaminopimelate decarboxylase	N/A
eggNOG-mapper	UHGV-0015364_2	1280698.AUJS01000007_gene997	390.0	0	N/A	N/A
UniRef90	UHGV-0015364_3	UniRef90_A0A3E5G7A7	2155.0	0	GRAM_POS_ANCHORING domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_3	1280698.AUJS01000007_gene998	2156.0	0	Cna protein B-type domain	N/A
Pfam	UHGV-0015364_3	PF17802	N/A	N/A	Prealbumin-like fold domain	SpaA
Pfam	UHGV-0015364_3	PF18202	N/A	N/A	T-Q ester bond containing domain	TQ
NCBIFam	UHGV-0015364_3	NF033903.0	N/A	N/A	VaFE repeat-containing surface-anchored protein	N/A
COG	UHGV-0015364_3	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
KOfam	UHGV-0015364_4	K14059	139.5	3.69999e-41	int; integrase	N/A
PHROG	UHGV-0015364_4	phrog_1	147.9	8.54792e-44	integrase	integration and excision
UniRef90	UHGV-0015364_4	UniRef90_UPI00040E88F0	715.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0015364_4	1280698.AUJS01000007_gene999	715.0	0	Phage integrase family	N/A
Pfam	UHGV-0015364_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015364_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0015364_4	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015364_5	UniRef90_UPI001D05C348	234.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_5	1235800.C819_00523	55.1	0.000000655	cell adhesion	N/A
Pfam	UHGV-0015364_5	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0015364_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015364_5	PF05154	N/A	N/A	N/A	N/A
KOfam	UHGV-0015364_7	K18830	69.9	4.7e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0015364_7	phrog_4	53.8	0.0000000000000048	transcriptional repressor	transcription regulation
UniRef90	UHGV-0015364_7	UniRef90_UPI00164CACBE	136.0	4.98e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_7	445972.ANACOL_03315	122.0	1.64e-34	N/A	N/A
Pfam	UHGV-0015364_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015364_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0015364_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015364_8	411468.CLOSCI_00322	52.4	0.0000000117	N/A	N/A
PHROG	UHGV-0015364_12	phrog_28456	43.8	0.0000000000046	N/A	unknown function
PHROG	UHGV-0015364_19	phrog_3584	133.1	1.6e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0015364_19	411461.DORFOR_01138	328.0	0	N/A	N/A
structural_annotation	UHGV-0015364_19	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0015364_21	K03469	52.7	0.0000000000000079	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0015364_21	phrog_531	57.1	3.5e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015364_21	UniRef90_A0A6N9JSQ7	271.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_21	1280698.AUJS01000007_gene1015	272.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0015364_21	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0015364_21	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0015364_21	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015364_22	1280698.AUJS01000007_gene1016	306.0	0	N/A	N/A
PHROG	UHGV-0015364_23	phrog_4433	57.7	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0015364_23	1280698.AUJS01000007_gene1017	375.0	0	N/A	N/A
structural_annotation	UHGV-0015364_23	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_24	phrog_8470	207.4	0	N/A	unknown function
UniRef90	UHGV-0015364_24	UniRef90_UPI001C01E393	876.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_24	1280698.AUJS01000007_gene1018	1425.0	0	N/A	N/A
Pfam	UHGV-0015364_24	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0015364_24	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_25	phrog_15077	92.3	8.9e-27	N/A	unknown function
UniRef90	UHGV-0015364_25	UniRef90_A0A3E3IZW1	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-0015364_25	1280698.AUJS01000007_gene1019	653.0	0	N/A	N/A
PHROG	UHGV-0015364_26	phrog_7566	109.0	1.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0015364_26	1280698.AUJS01000007_gene1020	241.0	0	N/A	N/A
PHROG	UHGV-0015364_28	phrog_8684	60.4	2.1e-17	N/A	unknown function
UniRef90	UHGV-0015364_28	UniRef90_UPI001C0F317C	103.0	4.69e-25	YopX family protein	N/A
eggNOG-mapper	UHGV-0015364_28	457412.RSAG_01162	87.0	2.73e-19	YopX protein	N/A
structural_annotation	UHGV-0015364_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015364_29	PF07870,TIGR02501	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015364_32	UniRef90_A0A4P8KL08	61.6	0.000000000693	N/A	N/A
eggNOG-mapper	UHGV-0015364_32	469596.HMPREF9488_03215	101.0	8.63e-26	N/A	N/A
structural_annotation	UHGV-0015364_32	PF16475	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_35	phrog_36	52.3	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015364_35	UniRef90_A0A416MN03	118.0	7.92e-31	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_35	1256908.HMPREF0373_00671	191.0	0	N/A	N/A
structural_annotation	UHGV-0015364_35	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_36	phrog_338	103.9	1.9e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0015364_36	UniRef90_UPI0015708A7C	241.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0015364_36	1280698.AUJS01000007_gene1032	228.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0015364_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0015364_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0015364_36	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_37	phrog_104	283.3	0	portal protein	head and packaging
UniRef90	UHGV-0015364_37	UniRef90_UPI001A9C29A4	579.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0015364_37	1280698.AUJS01000007_gene1033	818.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0015364_37	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_38	phrog_2494	384.7	0	minor head protein	head and packaging
UniRef90	UHGV-0015364_38	UniRef90_UPI00156EC2C0	750.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015364_38	1280698.AUJS01000007_gene1034	733.0	0	cell adhesion	N/A
Pfam	UHGV-0015364_38	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0015364_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015364_38	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_39	phrog_1865	51.1	0.000000000000018	N/A	unknown function
structural_annotation	UHGV-0015364_39	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_40	phrog_17688	346.5	0	N/A	unknown function
UniRef90	UHGV-0015364_40	UniRef90_R6SFU1	915.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0015364_40	1280698.AUJS01000007_gene1036	914.0	0	phage terminase, large subunit	N/A
COG	UHGV-0015364_40	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0015364_40	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_41	phrog_233	121.1	3.8e-37	head scaffolding protein	head and packaging
UniRef90	UHGV-0015364_41	UniRef90_A0A2S0L5H5	125.0	6.45e-34	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0015364_41	1280698.AUJS01000007_gene1037	269.0	0	N/A	N/A
Pfam	UHGV-0015364_41	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0015364_41	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_42	phrog_32396	146.7	3.36312e-44	N/A	unknown function
UniRef90	UHGV-0015364_42	UniRef90_UPI001961D35B	483.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0015364_42	1280698.AUJS01000007_gene1038	572.0	0	Phage capsid family	N/A
structural_annotation	UHGV-0015364_42	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_43	phrog_36603	68.0	1e-19	N/A	unknown function
PHROG	UHGV-0015364_44	phrog_137	110.4	8.3e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-0015364_44	UniRef90_UPI0019617F49	191.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0015364_44	1280698.AUJS01000007_gene1040	257.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0015364_44	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0015364_44	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0015364_45	phrog_501	91.8	5.6e-27	head closure Hc1	connector
UniRef90	UHGV-0015364_45	UniRef90_Q7Y4I1	134.0	1.39e-38	Gp43	N/A
eggNOG-mapper	UHGV-0015364_45	1280698.AUJS01000007_gene1041	227.0	0	N/A	N/A
structural_annotation	UHGV-0015364_45	PF12206,COG5614	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0015364	Yes	28,067	41	82	1