vOTU vOTU-111108

vOTU: vOTU-111108

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-111108
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania sp900120005
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01873 → vOTU-111108
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0081047
Biosample ID	SAMEA2784507
Genome length (bp)	27,162 bps
CheckV completeness	67.03% (Medium-quality)
CDS count	37
CDS density	95.16%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania	Total connections	21	Host agreement	90.48
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania sp900120005	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0081047_1	K04763	82.9	5.4e-24	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0081047_1	phrog_1	66.5	6e-19	integrase	integration and excision
UniRef90	UHGV-0081047_1	UniRef90_R7FIN7	104.0	1e-26	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0081047_1	1539298.JO41_06160	102.0	1.22e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0081047_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0081047_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
KOfam	UHGV-0081047_2	K03546	57.8	1.5e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0081047_2	phrog_1499	489.3	0	N/A	unknown function
UniRef90	UHGV-0081047_2	UniRef90_A0A412G6I7	760.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0081047_2	1232449.BAHV02000010_gene2696	574.0	0	AAA domain	N/A
Pfam	UHGV-0081047_2	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0081047_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0081047_2	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_3	phrog_124	251.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0081047_3	UniRef90_UPI0009337475	601.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0081047_3	1232449.BAHV02000018_gene1547	482.0	0	AAA domain	N/A
Pfam	UHGV-0081047_3	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0081047_3	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_4	phrog_2698	173.0	0	N/A	unknown function
UniRef90	UHGV-0081047_4	UniRef90_UPI000AD72823	323.0	0	N/A	N/A
eggNOG-mapper	UHGV-0081047_4	1232449.BAHV02000008_gene619	166.0	0	N/A	N/A
Pfam	UHGV-0081047_4	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0081047_4	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0081047_5	K17677	339.4	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0081047_5	phrog_16	277.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0081047_5	UniRef90_A0A412G6K1	1028.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0081047_5	610130.Closa_1369	854.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0081047_5	mREase_IV_00005	141.1	9.90017e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0081047_5	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0081047_5	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0081047_5	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0081047_5	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0081047_6	K07505	430.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0081047_6	phrog_2597	1216.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0081047_6	UniRef90_A0A412G6X4	1439.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0081047_6	999413.HMPREF1094_00232	1103.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0081047_6	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0081047_6	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0081047_6	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0081047_6	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0081047_8	K01160	61.2	3.1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0081047_8	phrog_140	97.6	1.4e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0081047_8	UniRef90_A0A412G6G4	255.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0081047_8	742738.HMPREF9460_01358	195.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0081047_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0081047_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0081047_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0081047_10	K00571	129.9	2.9e-38	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0081047_10	phrog_67	100.5	3.6e-31	DNA methyltransferase	other
UniRef90	UHGV-0081047_10	UniRef90_UPI000933F83B	514.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0081047_10	1314.HKU360_01238	358.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0081047_10	MTase_II_00157	101.6	9.7e-31	Type II methyltransferase	RM
Pfam	UHGV-0081047_10	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0081047_10	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0081047_10	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_13	phrog_24386	115.8	3.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0081047_13	511680.BUTYVIB_00647	103.0	1.55e-26	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0081047_13	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
PHROG	UHGV-0081047_14	phrog_36	55.9	8.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0081047_14	UniRef90_UPI00093217BF	272.0	0	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0081047_14	PF04545,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0081047_15	1235796.C815_00924	71.6	0.000000000000756	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0081047_15	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0081047_15	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
structural_annotation	UHGV-0081047_15	PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_17	phrog_498	155.1	0	DNA methyltransferase	other
UniRef90	UHGV-0081047_17	UniRef90_UPI0009327623	428.0	0	N/A	N/A
eggNOG-mapper	UHGV-0081047_17	935837.JAEK01000027_gene1654	160.0	9.3887e-44	DNA methylase	N/A
PADLOC	UHGV-0081047_17	MTase_II_00015	137.1	2.1e-40	Type II methyltransferase	RM
Pfam	UHGV-0081047_17	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0081047_17	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0081047_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0081047_17	PF02195,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_18	phrog_940	220.8	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0081047_18	UniRef90_UPI0009E35920	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0081047_18	1232449.BAHV02000018_gene1534	225.0	0	N/A	N/A
Pfam	UHGV-0081047_18	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0081047_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0081047_18	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_19	phrog_5057	142.5	2.59941e-42	N/A	unknown function
PHROG	UHGV-0081047_20	phrog_2412	74.1	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0081047_20	1232449.BAHV02000018_gene1532	102.0	1.35e-25	N/A	N/A
KOfam	UHGV-0081047_21	K06909	77.3	2.5e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0081047_21	phrog_2	56.6	6.1e-16	terminase large subunit	head and packaging
UniRef90	UHGV-0081047_21	UniRef90_UPI000AC0B46A	942.0	0	terminase	N/A
eggNOG-mapper	UHGV-0081047_21	1232449.BAHV02000018_gene1531	694.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0081047_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0081047_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_22	phrog_533	203.2	0	portal protein	head and packaging
UniRef90	UHGV-0081047_22	UniRef90_UPI001D09B198	558.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0081047_22	1232449.BAHV02000018_gene1530	677.0	0	N/A	N/A
structural_annotation	UHGV-0081047_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_23	phrog_581	287.6	0	minor head protein	head and packaging
UniRef90	UHGV-0081047_23	UniRef90_UPI001D0B0D83	345.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0081047_23	1232449.BAHV02000018_gene1529	348.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0081047_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0081047_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0081047_23	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0081047_24	428127.EUBDOL_01225	50.1	0.000000137	N/A	N/A
PHROG	UHGV-0081047_26	phrog_422	327.2	0	major head protein	head and packaging
UniRef90	UHGV-0081047_26	UniRef90_UPI0009340F4E	592.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0081047_26	1232449.BAHV02000018_gene1525	410.0	0	N/A	N/A
structural_annotation	UHGV-0081047_26	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_27	phrog_1378	52.0	0.000000000000012	N/A	unknown function
PHROG	UHGV-0081047_28	phrog_541	74.7	1.2e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0081047_28	1151292.QEW_2431	103.0	5.48e-27	N/A	N/A
PHROG	UHGV-0081047_29	phrog_8710	92.3	4.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0081047_29	552396.HMPREF0863_01638	125.0	8.67e-36	N/A	N/A
structural_annotation	UHGV-0081047_29	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_30	phrog_556	43.0	0.0000000000071	minor head protein	head and packaging
UniRef90	UHGV-0081047_30	UniRef90_UPI000AD7CE54	290.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0081047_30	552396.HMPREF0863_01639	128.0	1.9e-36	N/A	N/A
PHROG	UHGV-0081047_31	phrog_2595	86.4	2.6e-25	head-tail connector protein	connector
UniRef90	UHGV-0081047_31	UniRef90_UPI001D0A149F	169.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0081047_31	552396.HMPREF0863_01640	177.0	0	N/A	N/A
Pfam	UHGV-0081047_31	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0081047_31	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_32	phrog_820	112.8	2.2e-33	major tail protein	tail
eggNOG-mapper	UHGV-0081047_32	1280692.AUJL01000027_gene2154	204.0	0	domain, Protein	N/A
COG	UHGV-0081047_32	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0081047_32	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_33	phrog_8300	100.4	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0081047_33	1232449.BAHV02000018_gene1519	110.0	9.81e-30	N/A	N/A
structural_annotation	UHGV-0081047_33	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_34	phrog_8355	115.6	1.2e-34	N/A	unknown function
UniRef90	UHGV-0081047_34	UniRef90_A0A1I2KU85	113.0	1.25e-30	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0081047_34	1280692.AUJL01000027_gene2152	113.0	2.1e-31	N/A	N/A
structural_annotation	UHGV-0081047_34	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_35	phrog_1535	183.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0081047_35	UniRef90_A0A1I2KTM2	144.0	8.42e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-0081047_35	1232449.BAHV02000018_gene1517	184.0	1.4013e-45	SLT domain	N/A
COG	UHGV-0081047_35	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_36	phrog_1194	74.7	9.9e-22	N/A	unknown function
structural_annotation	UHGV-0081047_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0081047_37	phrog_13879	108.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0081047_37	645991.Sgly_0356	117.0	4.12e-26	N/A	N/A
structural_annotation	UHGV-0081047_37	PF19318,PF16466,MF_00813,NF010371,COG4266	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0081047	Yes	27,162	47	67	1