vOTU vOTU-111875

vOTU: vOTU-111875

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-111875
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-06648 → vGENUS-17099 → vOTU-111875
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0025274
Biosample ID	SAMEA4766167
Genome length (bp)	35,285 bps
CheckV completeness	88.03% (Medium-quality)
CDS count	48
CDS density	86.49%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	26	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0025274_2	K03733	65.6	1.1e-18	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0025274_2	phrog_1	69.6	6.7e-20	integrase	integration and excision
UniRef90	UHGV-0025274_2	UniRef90_A0A1Y4LKI1	89.7	3.75e-22	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0025274_2	1378168.N510_03404	102.0	7.46e-25	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0025274_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025274_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
eggNOG-mapper	UHGV-0025274_3	1280664.AUIX01000048_gene2862	77.4	6.76e-18	N/A	N/A
Pfam	UHGV-0025274_3	PF20476	N/A	N/A	N/A	DUF6718
structural_annotation	UHGV-0025274_3	PF20476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025274_4	UniRef90_E9SDQ9	81.6	7.72e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0025274_4	246199.CUS_7258	81.6	1.29e-17	N/A	N/A
PHROG	UHGV-0025274_5	phrog_13890	47.0	0.00000000000034	N/A	unknown function
UniRef90	UHGV-0025274_5	UniRef90_UPI0018758D33	55.5	0.00000000881	N/A	N/A
eggNOG-mapper	UHGV-0025274_5	693746.OBV_01760	54.3	0.00000000433	N/A	N/A
structural_annotation	UHGV-0025274_5	PF03869,NF010256	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025274_7	UniRef90_UPI001D079179	124.0	1.05e-27	S-layer homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0025274_7	693746.OBV_02310	103.0	1.1e-21	S-layer homology domain	N/A
Pfam	UHGV-0025274_7	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0025274_7	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
UniRef90	UHGV-0025274_8	UniRef90_UPI00195CFCED	293.0	0	C39 family peptidase	N/A
eggNOG-mapper	UHGV-0025274_8	397291.C804_01109	190.0	0	Phage lysozyme	N/A
Pfam	UHGV-0025274_8	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0025274_8	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0025274_8	PF03412,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_9	phrog_13256	63.7	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0025274_9	1226322.HMPREF1545_00132	72.4	7.05e-16	N/A	N/A
eggNOG-mapper	UHGV-0025274_10	693746.OBV_19010	111.0	7.13e-31	N/A	N/A
UniRef90	UHGV-0025274_11	UniRef90_A0A1Y4UW55	128.0	9.7e-37	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0025274_11	1007096.BAGW01000036_gene2665	136.0	1.06e-40	N/A	N/A
KOfam	UHGV-0025274_13	K10268	45.2	0.00000000000097	FBXL2_20; F-box and leucine-rich repeat protein 2/20	N/A
Pfam	UHGV-0025274_13	PF03382	N/A	N/A	N/A	DUF285
NCBIFam	UHGV-0025274_13	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
PHROG	UHGV-0025274_14	phrog_13589	67.6	9.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0025274_14	411471.SUBVAR_06929	146.0	2.26e-40	ATPase involved in DNA repair	N/A
COG	UHGV-0025274_14	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0025274_15	877414.ATWA01000062_gene1616	83.6	5.35e-16	N/A	N/A
structural_annotation	UHGV-0025274_15	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_17	phrog_32308	80.4	1.4e-31	N/A	unknown function
UniRef90	UHGV-0025274_17	UniRef90_UPI0009BA618E	112.0	4.47e-22	polymer-forming cytoskeletal protein	N/A
eggNOG-mapper	UHGV-0025274_17	1117108.PAALTS15_13507	103.0	4.55e-20	N/A	N/A
structural_annotation	UHGV-0025274_17	PF21683,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_18	phrog_1194	67.1	2.3e-19	N/A	unknown function
UniRef90	UHGV-0025274_18	UniRef90_A0A0R1Q5P9	53.1	0.00000181	N/A	N/A
eggNOG-mapper	UHGV-0025274_18	1232443.BAIA02000078_gene17	57.0	0.00000001	N/A	N/A
Pfam	UHGV-0025274_18	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0025274_18	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_19	phrog_1535	68.6	1.3e-23	tail length tape measure protein	tail
UniRef90	UHGV-0025274_19	UniRef90_A0A810PX76	101.0	2.09e-18	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0025274_19	1235797.C816_04182	186.0	0	SLT domain	N/A
COG	UHGV-0025274_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025274_19	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_20	phrog_706	104.1	1.3e-30	N/A	unknown function
UniRef90	UHGV-0025274_20	UniRef90_UPI000682A80B	200.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0025274_20	693746.OBV_18170	186.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0025274_20	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0025274_20	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_21	phrog_11299	61.5	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0025274_21	693746.OBV_18160	109.0	1.55e-28	N/A	N/A
structural_annotation	UHGV-0025274_21	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_22	phrog_3099	82.3	6.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0025274_22	693746.OBV_18150	216.0	0	N/A	N/A
structural_annotation	UHGV-0025274_22	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_23	phrog_3266	59.5	5.1e-17	tail completion	connector
eggNOG-mapper	UHGV-0025274_23	693746.OBV_18140	196.0	0	N/A	N/A
structural_annotation	UHGV-0025274_23	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_24	phrog_556	56.6	3.8e-16	minor head protein	head and packaging
UniRef90	UHGV-0025274_24	UniRef90_UPI00164EC49A	218.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0025274_24	1449050.JNLE01000003_gene3886	74.3	0.00000000000000964	N/A	N/A
Pfam	UHGV-0025274_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0025274_24	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025274_25	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_26	phrog_541	54.4	0.0000000000000022	head-tail adaptor	connector
eggNOG-mapper	UHGV-0025274_26	693746.OBV_18110	97.1	1.53e-24	N/A	N/A
UniRef90	UHGV-0025274_27	UniRef90_UPI00164D7D74	82.0	1.31e-19	C2H2-type zinc finger protein	N/A
Pfam	UHGV-0025274_27	PF00096	N/A	N/A	Zinc finger, C2H2 type	zf-C2H2
structural_annotation	UHGV-0025274_27	PF05605	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_28	phrog_422	242.6	0	major head protein	head and packaging
UniRef90	UHGV-0025274_28	UniRef90_W0U896	369.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0025274_28	693746.OBV_18090	437.0	0	N/A	N/A
structural_annotation	UHGV-0025274_28	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_29	phrog_194	94.5	1.4e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0025274_29	UniRef90_UPI00164D9F94	296.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0025274_29	693746.OBV_18080	176.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0025274_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0025274_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_30	phrog_581	199.7	0	minor head protein	head and packaging
UniRef90	UHGV-0025274_30	UniRef90_UPI0006814CA4	427.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0025274_30	693746.OBV_18050	422.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0025274_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0025274_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025274_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_31	phrog_533	205.9	0	portal protein	head and packaging
UniRef90	UHGV-0025274_31	UniRef90_UPI000680A1DB	629.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0025274_31	693746.OBV_18040	418.0	0	N/A	N/A
structural_annotation	UHGV-0025274_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0025274_33	K06909	383.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025274_33	phrog_3717	163.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0025274_33	UniRef90_UPI00164D9352	618.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0025274_33	411471.SUBVAR_06507	502.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0025274_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0025274_33	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0025274_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0025274_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025274_33	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0025274_34	K00390	48.4	0.000000000000062	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0025274_34	phrog_2302	77.0	5.2e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025274_34	UniRef90_R7FBQ3	296.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0025274_34	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
structural_annotation	UHGV-0025274_34	PF01507,MF_00064,NF006327,COG3969	N/A	N/A	N/A	N/A
PADLOC	UHGV-0025274_35	cluster3	102.9	6.2e-30	Csf1_0_IV	CRISPR-CAS
PHROG	UHGV-0025274_36	phrog_2412	90.3	2.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0025274_36	742738.HMPREF9460_02504	115.0	2.56e-31	N/A	N/A
UniRef90	UHGV-0025274_38	UniRef90_UPI001D079179	774.0	0	S-layer homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0025274_38	1226322.HMPREF1545_00689	102.0	3.88e-20	S-layer homology domain	N/A
Pfam	UHGV-0025274_38	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0025274_38	COG0737	N/A	N/A	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	N/A
KOfam	UHGV-0025274_40	K07171	75.4	1.2e-21	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0025274_40	phrog_1936	61.6	1.5e-17	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025274_40	UniRef90_UPI001940A20C	53.5	0.00000269	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0025274_40	1121385.AQXW01000004_gene1071	55.1	0.000000118	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0025274_40	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0025274_40	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
KOfam	UHGV-0025274_41	K01160	57.9	3.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025274_41	phrog_34	56.7	4.9e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025274_41	UniRef90_A0A844DBG8	149.0	6.16571e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0025274_41	875454.BAEW01000002_gene491	115.0	1.48e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0025274_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0025274_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025274_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0025274_43	phrog_1227	172.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025274_43	UniRef90_UPI0003092B20	173.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0025274_43	1007096.BAGW01000023_gene152	173.0	0	N/A	N/A
Pfam	UHGV-0025274_43	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0025274_43	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0025274_43	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025274_44	1120998.AUFC01000030_gene2214	61.2	0.00000000489	N/A	N/A
PHROG	UHGV-0025274_45	phrog_3377	110.9	9.9e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025274_45	UniRef90_Q4Z920	81.6	8.61e-16	ORF076	N/A
eggNOG-mapper	UHGV-0025274_45	1460635.JCM19038_3433	90.1	2.34e-19	N/A	N/A
Pfam	UHGV-0025274_47	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
KOfam	UHGV-0025274_48	K14059	149.2	5.1848e-44	int; integrase	N/A
PHROG	UHGV-0025274_48	phrog_1	118.0	1.1e-34	integrase	integration and excision
UniRef90	UHGV-0025274_48	UniRef90_A0A416ZCD7	305.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0025274_48	1378168.N510_03404	231.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0025274_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025274_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025274_48	PF14659,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025274	Yes	35,285	56	88	1