vOTU vOTU-112688

vOTU: vOTU-112688

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-112688
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00126 → vGENUS-00385 → vOTU-112688
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1460036
Biosample ID	SAMEA3541530
Genome length (bp)	35,656 bps
CheckV completeness	68.78% (Medium-quality)
CDS count	68
CDS density	88.92%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	115	Host agreement	74.78
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	20	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1460036_1	K14059	181.2	0	int; integrase	N/A
PHROG	UHGV-1460036_1	phrog_1	182.6	0	integrase	integration and excision
UniRef90	UHGV-1460036_1	UniRef90_A0A414P9D4	530.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1460036_1	1280698.AUJS01000007_gene999	336.0	0	Phage integrase family	N/A
Pfam	UHGV-1460036_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1460036_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1460036_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_2	phrog_806	105.5	5.5e-31	N/A	unknown function
UniRef90	UHGV-1460036_2	UniRef90_UPI0006C1B925	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-1460036_2	397290.C810_05150	204.0	0	N/A	N/A
Pfam	UHGV-1460036_2	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1460036_2	PF11611,MF_00791,NF041178,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_3	phrog_4611	70.8	1e-20	minor head protein	head and packaging
UniRef90	UHGV-1460036_3	UniRef90_UPI001EDCCFB6	677.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1460036_3	411902.CLOBOL_02557	151.0	2.49e-40	N/A	N/A
Pfam	UHGV-1460036_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-1460036_3	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_4	phrog_87	86.3	2.6e-25	metallo-protease	other
UniRef90	UHGV-1460036_4	UniRef90_UPI001EDDC74E	322.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1460036_4	1235792.C808_05259	206.0	0	Zn peptidase	N/A
Pfam	UHGV-1460036_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1460036_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1460036_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1460036_5	K22299	65.6	1e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1460036_5	phrog_8	76.7	4.4e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1460036_5	UniRef90_UPI001EE0856C	195.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1460036_5	1256908.HMPREF0373_00219	85.1	3.82e-20	sequence-specific DNA binding	N/A
PADLOC	UHGV-1460036_5	retron_type_VI_hth_cluster2_1	54.8	0.0000000000000024	N/A	Retron
Pfam	UHGV-1460036_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1460036_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1460036_5	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1460036_6	UniRef90_UPI001EE0CE96	125.0	1.61e-36	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1460036_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_11	phrog_463	208.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-1460036_11	UniRef90_UPI001B3C9121	361.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1460036_11	411490.ANACAC_00813	250.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1460036_11	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1460036_11	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1460036_11	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1460036_11	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_17	phrog_674	181.3	0	N/A	unknown function
UniRef90	UHGV-1460036_17	UniRef90_A0A373MX71	419.0	0	N/A	N/A
eggNOG-mapper	UHGV-1460036_17	411460.RUMTOR_02065	170.0	0	N/A	N/A
Pfam	UHGV-1460036_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1460036_17	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_18	phrog_155	140.4	1.19993e-41	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1460036_18	UniRef90_UPI001EDDFED5	388.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1460036_18	1298920.KI911353_gene4870	149.0	4.38046e-42	ERF superfamily	N/A
Pfam	UHGV-1460036_18	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1460036_18	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_19	phrog_72	46.0	0.00000000000054	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1460036_19	411470.RUMGNA_02194	135.0	1.45e-37	N/A	N/A
structural_annotation	UHGV-1460036_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_20	phrog_2113	45.8	0.00000000000068	N/A	unknown function
UniRef90	UHGV-1460036_20	UniRef90_A0A357NGS2	71.6	0.000000000000347	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1460036_20	365659.smi_2008	53.5	0.000000176	N/A	N/A
PHROG	UHGV-1460036_21	phrog_244	79.3	6.3e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1460036_21	33035.JPJF01000122_gene2460	160.0	0	N/A	N/A
structural_annotation	UHGV-1460036_21	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_22	phrog_10469	98.0	1.4e-29	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1460036_22	UniRef90_A0A174WT25	170.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1460036_22	742733.HMPREF9469_01845	155.0	2.70451e-43	N/A	N/A
structural_annotation	UHGV-1460036_22	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1460036_23	PF09889,MF_00649,NF001638,COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-1460036_24	UniRef90_A0A373MX33	310.0	0	N/A	N/A
Pfam	UHGV-1460036_24	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1460036_24	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_25	phrog_7488	40.9	0.0000000000077	N/A	unknown function
structural_annotation	UHGV-1460036_27	PF16467	N/A	N/A	N/A	N/A
KOfam	UHGV-1460036_28	K00571	125.2	6.7e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1460036_28	phrog_67	102.7	1.9e-30	DNA methyltransferase	other
UniRef90	UHGV-1460036_28	UniRef90_A0A396Q1C9	540.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1460036_28	411468.CLOSCI_00299	481.0	0	DNA methylase	N/A
PADLOC	UHGV-1460036_28	MTase_II_00157	97.6	1.4e-28	Type II methyltransferase	RM
Pfam	UHGV-1460036_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1460036_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1460036_28	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_33	phrog_9822	104.4	6.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1460036_34	887325.HMPREF0381_0090	94.0	6.98e-24	N/A	N/A
UniRef90	UHGV-1460036_35	UniRef90_A0A373MXP0	104.0	1.14e-26	N/A	N/A
eggNOG-mapper	UHGV-1460036_36	397290.C810_01505	130.0	2e-38	N/A	N/A
PHROG	UHGV-1460036_37	phrog_20593	40.4	0.000000000038	N/A	unknown function
UniRef90	UHGV-1460036_37	UniRef90_UPI001C00E342	84.7	1.71e-18	N/A	N/A
PHROG	UHGV-1460036_38	phrog_22292	90.1	8.3e-28	N/A	unknown function
PHROG	UHGV-1460036_39	phrog_8684	83.9	2e-25	N/A	unknown function
UniRef90	UHGV-1460036_39	UniRef90_UPI000CF845A0	280.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1460036_39	1235800.C819_02639	102.0	4.23e-26	YopX protein	N/A
Pfam	UHGV-1460036_39	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1460036_39	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1460036_39	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1460036_42	476272.RUMHYD_01751	134.0	2.55e-39	N/A	N/A
PHROG	UHGV-1460036_43	phrog_8680	246.4	0	N/A	unknown function
UniRef90	UHGV-1460036_43	UniRef90_A0A373MX42	435.0	0	N/A	N/A
eggNOG-mapper	UHGV-1460036_43	411470.RUMGNA_02208	288.0	0	N/A	N/A
Pfam	UHGV-1460036_43	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1460036_43	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_46	phrog_9479	135.6	2.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-1460036_46	633697.EubceDRAFT1_2041	53.1	0.00000051	N/A	N/A
structural_annotation	UHGV-1460036_46	PF15529	N/A	N/A	N/A	N/A
KOfam	UHGV-1460036_48	K07474	106.4	5.5e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1460036_48	phrog_51	112.1	4.5e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1460036_48	UniRef90_A0A373MWB9	298.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1460036_48	1235800.C819_00494	105.0	4.17e-27	Terminase small subunit	N/A
Pfam	UHGV-1460036_48	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1460036_48	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1460036_48	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1460036_49	K06909	117.1	1.8e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1460036_49	phrog_10250	163.7	0	N/A	unknown function
UniRef90	UHGV-1460036_49	UniRef90_A0A373MY72	854.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1460036_49	397290.C810_05187	689.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1460036_49	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1460036_49	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1460036_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1460036_49	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_50	phrog_533	257.2	0	portal protein	head and packaging
UniRef90	UHGV-1460036_50	UniRef90_A0A173R9C0	341.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1460036_50	476272.RUMHYD_01758	343.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1460036_50	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_51	phrog_1233	81.4	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1460036_51	411490.ANACAC_00786	83.6	5.82e-19	N/A	N/A
structural_annotation	UHGV-1460036_51	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_53	phrog_1048	136.9	2.10195e-44	N/A	unknown function
UniRef90	UHGV-1460036_53	UniRef90_A0A373MX10	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-1460036_53	457412.RSAG_01107	210.0	0	N/A	N/A
Pfam	UHGV-1460036_53	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1460036_53	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1460036_53	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_56	phrog_581	253.3	0	minor head protein	head and packaging
UniRef90	UHGV-1460036_56	UniRef90_A0A373MXM0	779.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1460036_56	476272.RUMHYD_01761	471.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1460036_56	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1460036_56	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1460036_56	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_57	phrog_194	60.4	4.5e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1460036_57	UniRef90_UPI001C1258D3	67.8	0.000000000137	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1460036_57	397290.C810_05223	90.9	5.53e-20	Phage minor structural protein GP20	N/A
Pfam	UHGV-1460036_57	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1460036_57	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-1460036_58	UniRef90_A0A0M2NI16	294.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1460036_58	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_60	phrog_541	98.6	4.2e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-1460036_60	476272.RUMHYD_01778	195.0	0	N/A	N/A
PHROG	UHGV-1460036_62	phrog_3366	103.7	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1460036_62	476272.RUMHYD_01779	189.0	0	N/A	N/A
structural_annotation	UHGV-1460036_62	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_63	phrog_556	77.3	1.4e-22	minor head protein	head and packaging
UniRef90	UHGV-1460036_63	UniRef90_UPI0008B4CFF0	160.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1460036_63	476272.RUMHYD_01780	216.0	0	N/A	N/A
Pfam	UHGV-1460036_63	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1460036_63	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_64	phrog_3266	85.2	5.3e-25	tail completion	connector
eggNOG-mapper	UHGV-1460036_64	476272.RUMHYD_01781	239.0	0	N/A	N/A
structural_annotation	UHGV-1460036_64	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_65	phrog_3099	124.2	8.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1460036_65	476272.RUMHYD_01782	257.0	0	N/A	N/A
structural_annotation	UHGV-1460036_65	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_66	phrog_11299	113.4	1.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-1460036_66	33035.JPJF01000106_gene3125	102.0	6.39e-26	N/A	N/A
structural_annotation	UHGV-1460036_66	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1460036_67	phrog_706	130.0	9.9e-39	N/A	unknown function
UniRef90	UHGV-1460036_67	UniRef90_UPI00156F9D1C	291.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1460036_67	411459.RUMOBE_01383	215.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1460036_67	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1460036_67	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1460036_68	411459.RUMOBE_01384	78.6	0.0000000000000148	phage tail tape measure protein	N/A
COG	UHGV-1460036_68	COG5412	N/A	N/A	Phage-related protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1460036	Yes	35,656	40	69	1
UHGV-0096436	No	33,917	40	65	1