vOTU vOTU-112692

vOTU: vOTU-112692

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-112692
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00102 → vSUBFAM-00821 → vGENUS-01198 → vOTU-112692
Host lineage	Bacteria → Firmicutes_A → Clostridia → UBA1381 → UBA1381 → CAG-41 → CAG-41 sp900066215
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1417780
Biosample ID	N/A
Genome length (bp)	34,874 bps
CheckV completeness	64.94% (Medium-quality)
CDS count	47
CDS density	94.92%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → UBA1381 → UBA1381 → CAG-41 → CAG-41 sp900066215	Total connections	148	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → UBA1381 → UBA1381 → CAG-41 → CAG-41 sp900066215	Total connections	124	Host agreement	96.77

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1417780_1	397290.C810_05225	70.9	0.00000000000000666	N/A	N/A
PHROG	UHGV-1417780_2	phrog_918	117.4	4.2e-35	N/A	unknown function
UniRef90	UHGV-1417780_2	UniRef90_UPI001CCDC3EB	125.0	7.53e-36	N/A	N/A
eggNOG-mapper	UHGV-1417780_2	1140001.I571_01827	120.0	1.77e-34	N/A	N/A
Pfam	UHGV-1417780_2	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1417780_2	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_3	K01448	104.8	8.6e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1417780_3	phrog_435	162.2	0	endolysin	lysis
UniRef90	UHGV-1417780_3	UniRef90_A0A1C5N460	342.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1417780_3	272563.CD630_09720	202.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1417780_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1417780_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1417780_3	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_4	K21471	156.5	0	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1417780_4	phrog_329	121.6	6.3e-36	minor tail protein	tail
UniRef90	UHGV-1417780_4	UniRef90_A0A355JE00	256.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1417780_4	86416.Clopa_0709	135.0	2.18e-32	Phage lysozyme	N/A
Pfam	UHGV-1417780_4	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1417780_4	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1417780_4	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1417780_6	phrog_9854	108.2	3.64338e-44	N/A	unknown function
UniRef90	UHGV-1417780_6	UniRef90_UPI001BB47D0E	1441.0	0	strawberry notch family protein	N/A
eggNOG-mapper	UHGV-1417780_6	1123288.SOV_4c02780	1098.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1417780_6	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1417780_6	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-1417780_6	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-1417780_6	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1417780_6	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1417780_7	K14059	237.0	0	int; integrase	N/A
PHROG	UHGV-1417780_7	phrog_1	210.4	0	integrase	integration and excision
UniRef90	UHGV-1417780_7	UniRef90_R6MY37	671.0	0	Putative integrase	N/A
eggNOG-mapper	UHGV-1417780_7	1203606.HMPREF1526_00215	218.0	0	Phage integrase family	N/A
Pfam	UHGV-1417780_7	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1417780_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1417780_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1417780_7	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1417780_9	1120998.AUFC01000015_gene1569	54.3	0.00000176	competence protein COMEC	N/A
COG	UHGV-1417780_9	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-1417780_11	phrog_87	86.0	3e-25	metallo-protease	other
UniRef90	UHGV-1417780_11	UniRef90_R6NN10	208.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1417780_11	536232.CLM_2576	117.0	6.94e-32	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1417780_11	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1417780_11	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1417780_11	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_12	K22300	56.5	6.5e-23	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1417780_12	phrog_8	77.0	6e-34	transcriptional regulator	transcription regulation
UniRef90	UHGV-1417780_12	UniRef90_R6MT43	376.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1417780_12	411460.RUMTOR_02056	100.0	2.4e-24	Bacteriophage CI repressor helix-turn-helix domain	N/A
PADLOC	UHGV-1417780_12	retron_type_VI_hth_cluster2_1	48.3	0.000000000000025	N/A	Retron
Pfam	UHGV-1417780_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
NCBIFam	UHGV-1417780_12	NF041951.1	N/A	N/A	RstR family transcriptional repressor	N/A
COG	UHGV-1417780_12	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
KOfam	UHGV-1417780_13	K07729	50.9	0.000000000000033	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1417780_13	phrog_8	49.3	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1417780_13	UniRef90_A0A847PN47	79.0	6.6e-18	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1417780_13	1121090.KB894686_gene2983	56.2	0.0000000061	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1417780_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1417780_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1417780_13	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_16	phrog_3150	53.3	0.0000000000000053	N/A	unknown function
eggNOG-mapper	UHGV-1417780_16	580331.Thit_1411	56.2	0.000000000318	N/A	N/A
structural_annotation	UHGV-1417780_20	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417780_21	PF17574	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417780_22	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_23	phrog_253	94.4	1.1e-27	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417780_23	UniRef90_R6MCS5	250.0	0	Siphovirus family protein	N/A
eggNOG-mapper	UHGV-1417780_23	411470.RUMGNA_02192	102.0	2.12e-25	Siphovirus Gp157	N/A
Pfam	UHGV-1417780_23	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1417780_23	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_24	phrog_7838	157.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417780_24	UniRef90_A0A8D9UGW3	205.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1417780_24	742767.HMPREF9456_02052	182.0	0	N/A	N/A
PHROG	UHGV-1417780_25	phrog_72	76.7	2.2e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417780_25	UniRef90_A0A8D9PDS2	177.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1417780_25	445972.ANACOL_01825	126.0	1.18e-34	N/A	N/A
structural_annotation	UHGV-1417780_25	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_26	phrog_7566	99.1	2.2e-29	N/A	unknown function
UniRef90	UHGV-1417780_26	UniRef90_A0A8D9UHC0	124.0	1.96e-35	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1417780_26	1507.HMPREF0262_00433	78.6	5.28e-18	N/A	N/A
KOfam	UHGV-1417780_28	K03111	135.1	7.69999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1417780_28	phrog_44	143.7	9.5008e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417780_28	UniRef90_R6M3F2	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1417780_28	394503.Ccel_0056	145.0	9.3887e-43	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1417780_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1417780_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1417780_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1417780_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1417780_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_29	K02086	64.6	1e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-1417780_29	phrog_2562	223.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417780_29	UniRef90_UPI00137AD09D	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1417780_29	445971.ANASTE_00700	183.0	0	N/A	N/A
Pfam	UHGV-1417780_29	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-1417780_29	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1417780_29	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1417780_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1417780_29	PF14297,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_30	phrog_1770	71.8	1.1e-20	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1417780_30	536233.CLO_1822	162.0	0	N/A	N/A
structural_annotation	UHGV-1417780_30	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_31	phrog_4400	132.6	0	N/A	unknown function
UniRef90	UHGV-1417780_31	UniRef90_A8ATU1	176.0	0	Gp53	N/A
eggNOG-mapper	UHGV-1417780_31	357809.Cphy_2990	277.0	0	N/A	N/A
dbAPIS	UHGV-1417780_31	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
structural_annotation	UHGV-1417780_31	PF01743,MF_00957,NF008634,COG0617	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_32	K07699	101.0	1e-29	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-1417780_32	phrog_37855	68.5	7.4e-20	N/A	unknown function
UniRef90	UHGV-1417780_32	UniRef90_R5TF41	80.9	1.28e-16	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-1417780_32	642492.Clole_1756	80.1	1.67e-16	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	N/A
Pfam	UHGV-1417780_32	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1417780_32	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1417780_32	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1417780_36	K19779	41.9	0.000000000016	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1417780_36	phrog_2245	61.3	1.5e-17	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1417780_36	UniRef90_A0A1C5STJ7	196.0	0	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-1417780_36	658655.HMPREF0988_00885	50.8	0.00000779	N/A	N/A
Pfam	UHGV-1417780_36	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1417780_36	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1417780_36	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1417780_36	PF14354,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_37	phrog_419	96.9	2.6e-28	N/A	unknown function
UniRef90	UHGV-1417780_37	UniRef90_A0A060QMU0	93.6	2.12e-23	N/A	N/A
eggNOG-mapper	UHGV-1417780_37	1123312.KB904569_gene346	100.0	8.87e-27	N/A	N/A
structural_annotation	UHGV-1417780_37	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1417780_38	phrog_6802	117.2	8.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-1417780_38	1256908.HMPREF0373_03028	89.7	6.97e-22	N/A	N/A
KOfam	UHGV-1417780_39	K03040	48.8	0.000000000000093	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	N/A
UniRef90	UHGV-1417780_39	UniRef90_A0A416CVN3	121.0	1.74e-33	RNA_pol_A_CTD domain-containing protein	N/A
eggNOG-mapper	UHGV-1417780_39	1410638.JHXJ01000004_gene2091	68.2	0.0000000000108	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	N/A
Pfam	UHGV-1417780_39	PF03118	N/A	N/A	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
COG	UHGV-1417780_39	COG0202	N/A	N/A	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	N/A
PHROG	UHGV-1417780_41	phrog_8684	82.9	3.2e-24	N/A	unknown function
UniRef90	UHGV-1417780_41	UniRef90_A0A1C5RI52	310.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1417780_41	1234679.BN424_2637	74.3	0.0000000000000062	YopX protein	N/A
Pfam	UHGV-1417780_41	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1417780_41	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1417780_41	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1417780_44	1235802.C823_04654	63.2	0.0000000000165	N/A	N/A
UniRef90	UHGV-1417780_47	UniRef90_A0A1Q9JGI6	59.3	0.00000000427	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1417780_47	1095750.HMPREF9970_2261	63.9	0.0000000000121	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1417780	Yes	34,874	36	65	1