vOTU vOTU-113347

vOTU: vOTU-113347

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113347
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00971 → vGENUS-05335 → vOTU-113347
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0097029
Biosample ID	SAMEA3541522
Genome length (bp)	35,431 bps
CheckV completeness	87.34% (Medium-quality)
CDS count	50
CDS density	95.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	130	Host agreement	98.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	120	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0097029_1	K14059	207.4	0	int; integrase	N/A
PHROG	UHGV-0097029_1	phrog_1	187.9	0	integrase	integration and excision
UniRef90	UHGV-0097029_1	UniRef90_UPI00195DFC45	431.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0097029_1	748224.HMPREF9436_01375	382.0	0	Phage integrase family	N/A
Pfam	UHGV-0097029_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0097029_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0097029_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_2	phrog_27136	169.0	0	N/A	unknown function
UniRef90	UHGV-0097029_2	UniRef90_A0A6I3Q7L2	249.0	0	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0097029_2	1282664.H354_06486	133.0	1.54e-35	Short C-terminal domain	N/A
Pfam	UHGV-0097029_2	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
UniRef90	UHGV-0097029_3	UniRef90_A0A0R3JUU2	135.0	9.33e-35	Tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0097029_3	1120746.CCNL01000013_gene1996	65.1	0.000000000464	N/A	N/A
structural_annotation	UHGV-0097029_3	PF18768,MF_00994,NF008756,COG5010	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_4	phrog_87	44.6	0.0000000000018	metallo-protease	other
UniRef90	UHGV-0097029_4	UniRef90_A0A1V5XGV6	76.6	0.0000000000000037	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097029_4	663278.Ethha_2376	71.6	0.0000000000000528	N/A	N/A
structural_annotation	UHGV-0097029_4	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_5	phrog_8	57.4	3.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0097029_5	UniRef90_A0A372V3Y4	161.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0097029_5	665956.HMPREF1032_02614	88.6	3.64e-21	Cro/C1-type HTH DNA-binding domain	N/A
structural_annotation	UHGV-0097029_5	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097029_6	UniRef90_A0A372V3V8	129.0	7.8e-38	XRE family transcriptional regulator	N/A
Pfam	UHGV-0097029_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0097029_6	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097029_7	UniRef90_A0A1C6D8K2	50.8	0.000000747	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0097029_7	693977.Deipr_1987	50.1	0.00000079	Helix-turn-helix domain	N/A
Pfam	UHGV-0097029_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0097029_7	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0097029_7	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0097029_7	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097029_9	UniRef90_UPI001967278A	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-0097029_9	97139.C824_03650	52.8	0.000000588	N/A	N/A
Pfam	UHGV-0097029_9	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0097029_9	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0097029_9	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_10	phrog_1733	71.7	8.5e-21	N/A	unknown function
UniRef90	UHGV-0097029_10	UniRef90_UPI00196846D9	718.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-0097029_10	665956.HMPREF1032_03597	547.0	0	DNA binding	N/A
COG	UHGV-0097029_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0097029_11	K03546	63.3	3.4e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0097029_11	phrog_1499	475.6	0	N/A	unknown function
UniRef90	UHGV-0097029_11	UniRef90_UPI001967B614	774.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0097029_11	1235798.C817_04766	485.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0097029_11	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0097029_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0097029_11	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_12	phrog_124	227.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097029_12	UniRef90_UPI00196823E0	729.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0097029_12	645991.Sgly_0321	365.0	0	AAA domain	N/A
Pfam	UHGV-0097029_12	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0097029_12	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_13	phrog_2698	192.5	0	N/A	unknown function
UniRef90	UHGV-0097029_13	UniRef90_UPI001966DD81	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-0097029_13	394503.Ccel_3308	153.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0097029_13	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_14	K17677	340.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0097029_14	phrog_16	268.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097029_14	UniRef90_UPI0019672759	1042.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0097029_14	1235798.C817_03499	774.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0097029_14	mREase_IV_00005	148.4	7.14662e-44	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0097029_14	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0097029_14	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0097029_14	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0097029_14	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_15	K07505	391.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0097029_15	phrog_2597	1117.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097029_15	UniRef90_UPI001967B211	1485.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0097029_15	552396.HMPREF0863_02435	920.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0097029_15	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0097029_15	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0097029_15	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0097029_15	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_16	K01160	54.2	0.0000000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0097029_16	phrog_140	83.4	3.4e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097029_16	UniRef90_UPI001967BB42	281.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0097029_16	394503.Ccel_3302	164.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0097029_16	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0097029_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0097029_16	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_19	K19779	43.3	0.0000000000063	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0097029_19	phrog_599	44.2	0.0000000000043	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0097029_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0097029_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
COG	UHGV-0097029_19	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0097029_19	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_21	phrog_38832	85.0	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0097029_21	665956.HMPREF1032_03087	161.0	0	N/A	N/A
PHROG	UHGV-0097029_22	phrog_424	127.4	1.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0097029_22	UniRef90_UPI0009767714	378.0	0	phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0097029_22	903814.ELI_3131	315.0	0	sulfate reduction	N/A
PADLOC	UHGV-0097029_22	SspD_00001	45.9	0.0000000000018	SspD	SSP
COG	UHGV-0097029_22	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0097029_22	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0097029_26	1304880.JAGB01000002_gene2225	59.3	0.00000000406	N/A	N/A
structural_annotation	UHGV-0097029_26	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_27	K07474	159.0	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0097029_27	phrog_51	149.6	1.54143e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0097029_27	UniRef90_A0A372V657	285.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0097029_27	742740.HMPREF9474_03499	236.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0097029_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0097029_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0097029_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_28	K06909	78.8	7.9e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0097029_28	phrog_2	66.3	6.6e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0097029_28	UniRef90_A0A372V3S5	925.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0097029_28	645991.Sgly_0335	613.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0097029_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0097029_28	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_29	phrog_533	240.9	0	portal protein	head and packaging
UniRef90	UHGV-0097029_29	UniRef90_A0A372V6F6	984.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0097029_29	1507.HMPREF0262_01175	518.0	0	N/A	N/A
structural_annotation	UHGV-0097029_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_30	phrog_581	264.4	0	minor head protein	head and packaging
UniRef90	UHGV-0097029_30	UniRef90_UPI000A270255	389.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097029_30	1507.HMPREF0262_01176	347.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0097029_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0097029_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097029_30	PF06152,NF005921,TIGR01641,COG2153	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_32	phrog_2303	57.5	2.9e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0097029_33	UniRef90_A0A644YJM4	325.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0097029_33	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_35	phrog_541	73.2	3.5e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0097029_35	1122918.KB907248_gene4496	95.1	1.53e-23	N/A	N/A
PHROG	UHGV-0097029_36	phrog_8710	87.4	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0097029_36	1507.HMPREF0262_01181	94.7	9.56e-24	N/A	N/A
structural_annotation	UHGV-0097029_36	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097029_37	UniRef90_UPI0003798593	89.7	1.1e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0097029_37	1122918.KB907248_gene4494	89.7	1.85e-21	Minor capsid protein	N/A
PHROG	UHGV-0097029_38	phrog_2595	68.6	9.3e-20	head-tail connector protein	connector
UniRef90	UHGV-0097029_38	UniRef90_UPI000A26871F	114.0	4.16e-30	minor capsid protein	N/A
eggNOG-mapper	UHGV-0097029_38	1304866.K413DRAFT_0780	68.2	0.00000000000075	N/A	N/A
Pfam	UHGV-0097029_38	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0097029_38	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_39	phrog_820	125.2	2.9e-37	major tail protein	tail
eggNOG-mapper	UHGV-0097029_39	1507.HMPREF0262_01184	208.0	0	domain, Protein	N/A
COG	UHGV-0097029_39	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097029_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_40	phrog_8300	93.1	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0097029_40	1507.HMPREF0262_01185	96.7	1.25e-24	N/A	N/A
structural_annotation	UHGV-0097029_40	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_41	phrog_8355	80.8	8.4e-24	N/A	unknown function
UniRef90	UHGV-0097029_41	UniRef90_UPI0018A7EA5D	110.0	7.59e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0097029_41	1507.HMPREF0262_01186	93.6	2.92e-23	N/A	N/A
structural_annotation	UHGV-0097029_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_42	phrog_1535	110.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0097029_42	UniRef90_S9TWQ7	121.0	2e-24	Phage-like protein	N/A
eggNOG-mapper	UHGV-0097029_42	1122918.KB907248_gene4489	136.0	4.72e-30	minor tail protein	N/A
COG	UHGV-0097029_42	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_43	phrog_1194	55.0	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0097029_43	742740.HMPREF9474_03515	63.2	0.0000000000528	N/A	N/A
Pfam	UHGV-0097029_43	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0097029_43	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_44	phrog_13879	240.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0097029_44	1235800.C819_00474	185.0	0	N/A	N/A
structural_annotation	UHGV-0097029_44	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_45	phrog_13564	71.6	5e-21	minor tail protein	tail
eggNOG-mapper	UHGV-0097029_45	585501.HMPREF6123_0822	74.3	0.000000000000255	N/A	N/A
eggNOG-mapper	UHGV-0097029_46	1304866.K413DRAFT_0769	67.0	0.0000000000574	N/A	N/A
PHROG	UHGV-0097029_47	phrog_24451	73.7	2.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0097029_47	1408437.JNJN01000040_gene189	75.9	4.69e-16	N/A	N/A
PHROG	UHGV-0097029_48	phrog_419	76.9	4.1e-24	N/A	unknown function
UniRef90	UHGV-0097029_48	UniRef90_A0A1L5L3J8	119.0	4.61e-34	PGDYG protein (Fragment)	N/A
eggNOG-mapper	UHGV-0097029_48	864563.HMPREF9166_1012	90.5	1.65e-23	N/A	N/A
structural_annotation	UHGV-0097029_48	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0097029_49	phrog_134	56.5	3.7e-16	N/A	unknown function
UniRef90	UHGV-0097029_49	UniRef90_A0A372V0Q1	70.1	0.00000000000000408	XkdX family protein	N/A
eggNOG-mapper	UHGV-0097029_49	697281.Mahau_0596	50.8	0.0000000301	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0097029_49	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0097029_49	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0097029_49	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0097029_50	K21472	81.4	1.8e-23	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0097029_50	phrog_7767	79.9	3.4e-23	metallo-endopeptidase	other
UniRef90	UHGV-0097029_50	UniRef90_A0A0W7TLV7	340.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0097029_50	665956.HMPREF1032_00102	342.0	0	heme binding	N/A
Pfam	UHGV-0097029_50	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0097029_50	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0097029	Yes	35,431	56	87	1