vOTU vOTU-113474

vOTU: vOTU-113474

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113474
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-04122 → vOTU-113474
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0156287
Biosample ID	SAMN06110143
Genome length (bp)	26,049 bps
CheckV completeness	77.98% (Medium-quality)
CDS count	39
CDS density	96.12%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1114	Host agreement	78.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	106	Host agreement	98.11

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0156287_1	phrog_124	98.7	6.4e-29	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156287_1	UniRef90_A0A2N0UXR5	425.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0156287_1	411462.DORLON_00811	243.0	0	AAA domain	N/A
Pfam	UHGV-0156287_1	PF13479	N/A	N/A	AAA domain	AAA_24
PHROG	UHGV-0156287_2	phrog_2698	177.3	0	N/A	unknown function
UniRef90	UHGV-0156287_2	UniRef90_UPI000F54335B	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0156287_2	742723.HMPREF9477_00927	135.0	2.42e-38	N/A	N/A
structural_annotation	UHGV-0156287_2	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0156287_3	K17677	363.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0156287_3	phrog_16	297.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156287_3	UniRef90_A0A412ULZ3	1042.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0156287_3	1235798.C817_03499	838.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0156287_3	mREase_IV_00005	132.5	3.9e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0156287_3	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0156287_3	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0156287_3	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0156287_3	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0156287_4	K07505	401.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0156287_4	phrog_2597	1169.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156287_4	UniRef90_A0A2N0UXP7	1499.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0156287_4	394503.Ccel_3304	959.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0156287_4	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0156287_4	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0156287_4	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0156287_4	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_5	phrog_16687	74.2	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0156287_5	1123511.KB905868_gene197	66.2	0.00000000000032	N/A	N/A
PHROG	UHGV-0156287_6	phrog_140	90.9	1.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156287_6	UniRef90_A0A2N0UXU6	272.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0156287_6	411462.DORLON_00806	203.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0156287_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0156287_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0156287_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0156287_7	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_12	phrog_10714	45.2	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0156287_12	742723.HMPREF9477_00922	53.9	0.0000000221	N/A	N/A
KOfam	UHGV-0156287_13	K18830	51.9	0.000000000000019	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0156287_13	phrog_8	63.0	7.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0156287_13	UniRef90_A0A374N9T4	122.0	3.31e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0156287_13	717605.Theco_0106	77.0	3.65e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0156287_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0156287_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0156287_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_17	phrog_119	54.5	0.0000000000000017	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0156287_17	UniRef90_A0A374N9T6	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0156287_17	1235793.C809_01915	117.0	4.14e-32	HNH endonuclease	N/A
COG	UHGV-0156287_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0156287_18	phrog_1066	115.5	2.7e-34	N/A	unknown function
UniRef90	UHGV-0156287_18	UniRef90_A0A0D0SQQ8	84.7	9.98e-19	N/A	N/A
eggNOG-mapper	UHGV-0156287_18	1203606.HMPREF1526_00982	106.0	3.29e-28	N/A	N/A
PHROG	UHGV-0156287_19	phrog_9	391.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0156287_19	UniRef90_A0A374NB45	986.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0156287_19	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-0156287_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0156287_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0156287_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0156287_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_20	phrog_12	180.8	0	portal protein	head and packaging
UniRef90	UHGV-0156287_20	UniRef90_A0A374NAE1	768.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0156287_20	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-0156287_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0156287_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0156287_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0156287_21	K01358	118.5	8.4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0156287_21	phrog_94	185.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0156287_21	UniRef90_A0A374NBM3	403.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0156287_21	1203606.HMPREF1526_00979	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0156287_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0156287_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0156287_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_22	phrog_10	149.7	2.66247e-44	major head protein	head and packaging
UniRef90	UHGV-0156287_22	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0156287_22	1280689.AUJC01000011_gene1521	329.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0156287_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0156287_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0156287_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0156287_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_23	phrog_5223	54.9	0.0000000000000014	neck protein	connector
eggNOG-mapper	UHGV-0156287_23	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-0156287_23	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0156287_23	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_24	phrog_1951	87.0	1.5e-25	head-tail adaptor	connector
UniRef90	UHGV-0156287_24	UniRef90_A0A374MZF9	198.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0156287_24	457396.CSBG_01051	58.5	0.0000000011	head-tail adaptor	N/A
COG	UHGV-0156287_24	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0156287_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0156287_25	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0156287_25	1414720.CBYM010000040_gene1650	134.0	2.73e-38	N/A	N/A
structural_annotation	UHGV-0156287_25	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0156287_26	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_27	phrog_885	134.8	5.8e-40	major tail protein	tail
UniRef90	UHGV-0156287_27	UniRef90_Q894J4	159.0	1.4013e-45	Conserved protein	N/A
eggNOG-mapper	UHGV-0156287_27	1321814.HMPREF9089_00935	172.0	0	N/A	N/A
structural_annotation	UHGV-0156287_27	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_28	phrog_1021	48.4	0.0000000000000066	N/A	unknown function
PHROG	UHGV-0156287_30	phrog_23464	247.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0156287_30	665950.HMPREF1025_02660	184.0	0	phage tail tape measure protein	N/A
COG	UHGV-0156287_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0156287_30	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0156287_31	UniRef90_A0A1G5CPA2	116.0	8.31e-28	Phage-related protein	N/A
eggNOG-mapper	UHGV-0156287_31	1246.JMEA01000006_gene51	68.9	0.000000000046	phage tail	N/A
COG	UHGV-0156287_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0156287_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_32	phrog_1067	137.5	9.99995e-41	minor head protein	head and packaging
UniRef90	UHGV-0156287_32	UniRef90_A0A348ZBV6	180.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0156287_32	1160721.RBI_I01574	125.0	3e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0156287_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0156287_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0156287_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0156287_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_33	phrog_5302	282.4	0	tail protein	tail
UniRef90	UHGV-0156287_33	UniRef90_A0A373XLZ6	1278.0	0	N/A	N/A
eggNOG-mapper	UHGV-0156287_33	742740.HMPREF9474_02337	317.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0156287_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0156287_33	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0156287_33	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_35	phrog_1863	72.2	6.1e-22	N/A	unknown function
UniRef90	UHGV-0156287_35	UniRef90_UPI001F223E8B	105.0	6.23e-28	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0156287_35	1226322.HMPREF1545_04027	75.9	3.8e-17	N/A	N/A
PHROG	UHGV-0156287_36	phrog_443	63.4	6.3e-18	holin	lysis
UniRef90	UHGV-0156287_36	UniRef90_R6R2Q3	91.7	5.03e-23	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0156287_36	1298920.KI911353_gene2669	82.8	2.78e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0156287_36	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0156287_36	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0156287_37	phrog_18591	124.0	8.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0156287_37	1230343.CANP01000040_gene3044	180.0	0	N/A	N/A
KOfam	UHGV-0156287_38	K01448	51.4	0.000000000000016	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0156287_38	phrog_1794	82.2	9.5e-24	amidase	lysis
UniRef90	UHGV-0156287_38	UniRef90_A0A373KFY8	443.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0156287_38	573061.Clocel_3960	87.4	1.14e-16	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0156287_38	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0156287_38	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0156287_38	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0156287_38	PF01520,PF18342,NF038140,COG0860,COG4991	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0156287	Yes	26,049	42	78	1