vOTU vOTU-113491

vOTU: vOTU-113491

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113491
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00070 → vOTU-113491
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria
Host range breadth	Class
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1496296
Biosample ID	N/A
Genome length (bp)	43,596 bps
CheckV completeness	59.51% (Medium-quality)
CDS count	69
CDS density	91.54%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria	Total connections	4	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 59.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1496296_2	K00558	217.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1496296_2	phrog_116	250.3	0	DNA methyltransferase	other
UniRef90	UHGV-1496296_2	UniRef90_H1CIV2	787.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1496296_2	1121334.KB911073_gene1852	659.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1496296_2	MTase_II_00020	101.6	1.9e-33	Type II methyltransferase	RM
Pfam	UHGV-1496296_2	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1496296_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1496296_2	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_3	K00390	50.6	6e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1496296_3	phrog_424	121.3	2.4e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1496296_3	UniRef90_UPI00189E7983	489.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1496296_3	1291050.JAGE01000002_gene3264	464.0	0	sulfate reduction	N/A
Pfam	UHGV-1496296_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1496296_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1496296_3	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_4	K06223	209.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1496296_4	phrog_56	160.7	0	DNA methyltransferase	other
UniRef90	UHGV-1496296_4	UniRef90_UPI0018AA35A1	417.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1496296_4	1226322.HMPREF1545_00291	375.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1496296_4	MTase_II_00030	225.9	0	Type II methyltransferase	RM
Pfam	UHGV-1496296_4	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1496296_4	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1496296_4	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_5	K07319	91.9	7.9e-29	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1496296_5	phrog_23224	68.5	2.1e-34	DNA methyltransferase	other
UniRef90	UHGV-1496296_5	UniRef90_A0A6M4K7T8	295.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1496296_5	1268240.ATFI01000007_gene431	213.0	0	DNA methylase	N/A
PADLOC	UHGV-1496296_5	MTase_II_00172	150.7	8.40779e-45	Type II methyltransferase	RM
Pfam	UHGV-1496296_5	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1496296_5	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1496296_5	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1496296_6	1232449.BAHV02000018_gene1537	135.0	3.57e-39	N/A	N/A
eggNOG-mapper	UHGV-1496296_11	1304866.K413DRAFT_4695	59.7	0.0000000000719	N/A	N/A
structural_annotation	UHGV-1496296_11	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_12	phrog_1891	74.3	2e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496296_12	UniRef90_A0A1E5TJA0	71.6	0.00000000000343	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1496296_12	552396.HMPREF0863_00287	67.0	0.0000000000742	HNH endonuclease	N/A
Pfam	UHGV-1496296_12	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1496296_14	phrog_1384	127.3	1e-37	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1496296_14	1235797.C816_01664	182.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1496296_14	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_19	phrog_2118	99.6	3.7e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496296_19	UniRef90_A0A417HX51	194.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1496296_19	610130.Closa_0730	122.0	3.78e-34	HNH endonuclease	N/A
Pfam	UHGV-1496296_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1496296_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1496296_19	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_20	phrog_18349	77.7	6.7e-23	N/A	unknown function
UniRef90	UHGV-1496296_20	UniRef90_A0A2V2FJ47	91.7	4.51e-20	N/A	N/A
eggNOG-mapper	UHGV-1496296_20	476272.RUMHYD_03338	73.6	0.0000000000000743	N/A	N/A
Pfam	UHGV-1496296_20	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1496296_22	phrog_3136	127.7	4.2e-38	N/A	unknown function
UniRef90	UHGV-1496296_22	UniRef90_A0A6N7TMC2	134.0	2.57e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1496296_22	1007096.BAGW01000031_gene120	63.9	0.00000000105	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1496296_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1496296_22	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_25	phrog_13321	57.7	7.3e-17	N/A	unknown function
UniRef90	UHGV-1496296_25	UniRef90_UPI00030D2C45	321.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1496296_25	1235797.C816_03559	322.0	0	PFAM Radical SAM	N/A
COG	UHGV-1496296_25	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-1496296_25	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_29	K14059	180.6	0	int; integrase	N/A
PHROG	UHGV-1496296_29	phrog_1	168.4	0	integrase	integration and excision
UniRef90	UHGV-1496296_29	UniRef90_A0A3C1UWE4	392.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1496296_29	1321814.HMPREF9089_00905	195.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1496296_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1496296_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1496296_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1496296_29	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_32	phrog_8	48.2	0.00000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-1496296_32	UniRef90_A0A1C6FNL9	97.8	3.98e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1496296_32	742738.HMPREF9460_02485	75.9	2.86e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1496296_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1496296_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1496296_32	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1496296_33	UniRef90_A0A845R4W0	92.0	6.48e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1496296_33	1007096.BAGW01000023_gene157	68.6	0.0000000000000181	N/A	N/A
structural_annotation	UHGV-1496296_33	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_34	K07741	91.9	1.5e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-1496296_34	phrog_130	267.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1496296_34	UniRef90_UPI000F05386B	357.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-1496296_34	1391647.AVSV01000003_gene1780	282.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1496296_34	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1496296_34	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1496296_34	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1496296_34	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_36	PF12728,NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-1496296_38	UniRef90_A0A8H0W1X2	48.1	0.00000391	Resolvase	N/A
PHROG	UHGV-1496296_39	phrog_434	128.5	5.9e-38	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496296_39	UniRef90_A0A417WEV5	179.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1496296_39	1122173.AXVL01000067_gene1957	103.0	1.01e-24	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1496296_39	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1496296_39	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1496296_39	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1496296_39	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_40	K03091	85.3	8.8e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-1496296_40	phrog_351	57.2	8.9e-21	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-1496296_40	UniRef90_A0A2V2FEJ4	65.9	0.00000000091	RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1496296_40	857293.CAAU_2536	54.3	0.00000205	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
Pfam	UHGV-1496296_40	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-1496296_40	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1496296_40	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1496296_40	PF04542,PF08281,MF_00959,NF004471,COG0568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_44	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_45	phrog_674	134.9	6.4e-40	N/A	unknown function
UniRef90	UHGV-1496296_45	UniRef90_A0A4P9C8L7	142.0	6.63e-37	N/A	N/A
eggNOG-mapper	UHGV-1496296_45	556268.OFAG_00840	98.2	3.49e-21	N/A	N/A
Pfam	UHGV-1496296_45	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1496296_45	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_46	phrog_2760	176.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496296_46	UniRef90_A0A2V2CTE3	203.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1496296_46	1235794.C811_01355	181.0	0	RecT family	N/A
Pfam	UHGV-1496296_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1496296_46	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1496296_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1496296_46	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1496296_47	K03111	56.4	8.2e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1496296_47	phrog_44	61.3	2.8e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496296_47	1499683.CCFF01000014_gene3925	52.8	0.000000932	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1496296_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1496296_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1496296_47	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_48	phrog_5968	68.4	2.6e-20	replisome organizer	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496296_48	718252.FP2_01000	146.0	1.65e-37	N/A	N/A
COG	UHGV-1496296_48	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1496296_49	K02314	298.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1496296_49	phrog_19	226.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1496296_49	UniRef90_UPI001875E60F	227.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1496296_49	742738.HMPREF9460_00852	207.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1496296_49	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1496296_49	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1496296_49	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1496296_49	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_51	phrog_190	82.0	5.2e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1496296_51	1226322.HMPREF1545_00295	79.3	0.00000000000000317	N/A	N/A
Pfam	UHGV-1496296_51	PF06356	N/A	N/A	N/A	DUF1064
PHROG	UHGV-1496296_53	phrog_15503	47.4	0.00000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1496296_53	1560313.A0A0D3MT14_9CAUD	130.0	2.45e-29	N/A	N/A
structural_annotation	UHGV-1496296_53	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_55	phrog_2739	103.6	7e-31	portal protein	head and packaging
structural_annotation	UHGV-1496296_55	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_56	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_57	phrog_3313	65.7	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1496296_57	1151292.QEW_0632	58.5	0.00000239	N/A	N/A
structural_annotation	UHGV-1496296_57	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_59	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_61	PF20010	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_62	phrog_1129	69.1	4.5e-20	holin	lysis
UniRef90	UHGV-1496296_62	UniRef90_A0A416MDZ9	114.0	3.57e-31	Enolase	N/A
eggNOG-mapper	UHGV-1496296_62	411473.RUMCAL_01944	111.0	4.5e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1496296_62	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1496296_62	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_63	phrog_4105	49.2	0.000000000000058	N/A	unknown function
structural_annotation	UHGV-1496296_64	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-1496296_65	phrog_16444	43.9	0.0000000000014	N/A	unknown function
Pfam	UHGV-1496296_65	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-1496296_65	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1496296_69	PF09646	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1496296	Yes	43,596	55	60	1