vOTU vOTU-113507

vOTU: vOTU-113507

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113507
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00041 → vSUBFAM-00894 → vGENUS-03015 → vOTU-113507
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter sp900540355
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1435050
Biosample ID	N/A
Genome length (bp)	38,435 bps
CheckV completeness	58.49% (Medium-quality)
CDS count	55
CDS density	93.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Intestinibacter → Intestinibacter sp900540355	Total connections	6	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1435050_2	phrog_202	82.7	0	distal tail protein Dit	tail
UniRef90	UHGV-1435050_2	UniRef90_UPI001D166F36	439.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1435050_2	1340434.AXVA01000005_gene4863	82.0	0.000000000000246	Phage tail protein	N/A
Pfam	UHGV-1435050_2	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
Pfam	UHGV-1435050_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
NCBIFam	UHGV-1435050_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1435050_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1435050_2	PF05709,PF18342,TIGR01633,NF040670,COG4722,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_3	phrog_1533	404.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1435050_3	537007.BLAHAN_04244	351.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1435050_3	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1435050_3	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1435050_3	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1435050_3	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_4	phrog_6541	49.0	0.000000000000074	N/A	unknown function
PHROG	UHGV-1435050_5	phrog_6280	103.7	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1435050_5	1304880.JAGB01000002_gene2210	57.4	0.0000000153	N/A	N/A
PHROG	UHGV-1435050_6	phrog_6686	172.5	0	tail tube protein	tail
UniRef90	UHGV-1435050_6	UniRef90_E7DNB3	175.0	0	Structural protein	N/A
eggNOG-mapper	UHGV-1435050_6	1443125.Z962_p0060	180.0	0	N/A	N/A
structural_annotation	UHGV-1435050_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435050_7	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435050_8	UniRef90_UPI001E31310C	65.1	0.0000000000304	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1435050_8	697281.Mahau_0066	71.2	0.0000000000000187	N/A	N/A
structural_annotation	UHGV-1435050_8	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435050_9	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_10	phrog_4020	59.8	4.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1435050_10	431943.CKL_3268	60.5	0.000000000147	N/A	N/A
PHROG	UHGV-1435050_11	phrog_29	204.4	0	major head protein	head and packaging
UniRef90	UHGV-1435050_11	UniRef90_UPI001D166481	507.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1435050_11	59241.E7DNA7_BPDP1	310.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1435050_11	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1435050_11	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435050_12	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_13	phrog_194	127.9	7.9e-38	head scaffolding protein	head and packaging
UniRef90	UHGV-1435050_13	UniRef90_U7UKE1	57.0	0.00000214	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1435050_13	1111454.HMPREF1250_0184	57.0	0.000000358	Phage minor structural protein GP20	N/A
Pfam	UHGV-1435050_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1435050_13	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_15	phrog_1657	115.7	5.6e-34	head morphogenesis	head and packaging
UniRef90	UHGV-1435050_15	UniRef90_UPI001D165CB3	239.0	0	phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1435050_15	536233.CLO_0535	168.0	1.17989e-42	N/A	N/A
structural_annotation	UHGV-1435050_15	PF06152,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_17	phrog_64	166.9	0	portal protein	head and packaging
UniRef90	UHGV-1435050_17	UniRef90_UPI001E369C6C	572.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1435050_17	59241.E7DNA2_BPDP1	369.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1435050_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_18	K06909	145.7	4.1058e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1435050_18	phrog_2	164.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1435050_18	UniRef90_UPI001E406D12	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1435050_18	59241.E7DNA1_BPDP1	511.0	0	Terminase-like family	N/A
Pfam	UHGV-1435050_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1435050_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1435050_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-1435050_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_19	phrog_23746	95.7	5.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1435050_19	871584.D9ZNC5_9CAUD	68.2	0.0000000000194	N/A	N/A
structural_annotation	UHGV-1435050_19	PF10668	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_20	phrog_9079	76.2	3.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1435050_20	1391646.AVSU01000053_gene947	67.0	0.000000000000529	N/A	N/A
PHROG	UHGV-1435050_23	phrog_424	86.9	2.3e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1435050_23	UniRef90_C0EBX2	223.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1435050_23	537013.CLOSTMETH_01340	223.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1435050_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1435050_23	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435050_24	PF02319,COG1321	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_27	K03095	50.1	0.000000000000046	sprL; SprT-like protein	N/A
PHROG	UHGV-1435050_27	phrog_3768	43.2	0.0000000000079	N/A	unknown function
Pfam	UHGV-1435050_27	PF10263	N/A	N/A	SprT-like family	SprT-like
structural_annotation	UHGV-1435050_27	PF17283,PF01435,MF_00745,NF003339,COG2331	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_31	phrog_1485	88.6	8.7e-26	N/A	unknown function
UniRef90	UHGV-1435050_31	UniRef90_UPI000C783873	98.6	4.7e-25	N/A	N/A
eggNOG-mapper	UHGV-1435050_31	445335.CBN_2306	89.0	4.74e-22	N/A	N/A
Pfam	UHGV-1435050_31	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
KOfam	UHGV-1435050_34	K03465	92.0	7.5e-27	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1435050_34	phrog_85	69.7	4.3e-20	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_34	UniRef90_UPI0018AA0C72	404.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1435050_34	290397.Adeh_1139	73.9	0.00000000000086	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1435050_34	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-1435050_34	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-1435050_34	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_37	K02340	76.3	5.1e-22	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	N/A
PHROG	UHGV-1435050_37	phrog_20214	191.2	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_37	UniRef90_A0A1W7AF03	150.0	7.13e-40	DNA polymerase III subunit gamma	N/A
eggNOG-mapper	UHGV-1435050_37	871584.D9ZNJ1_9CAUD	105.0	1.94e-23	N/A	N/A
structural_annotation	UHGV-1435050_37	PF21694,PF06144,MF_01509,NF005134,COG1466	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_39	K02341	73.6	3.3e-22	holB; DNA polymerase III subunit delta' [EC:2.7.7.7]	N/A
PHROG	UHGV-1435050_39	phrog_5846	84.2	1.7e-24	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_39	UniRef90_E7DN82	112.0	8.83e-26	DNA polymerase III gamma-tau subunit	N/A
eggNOG-mapper	UHGV-1435050_39	59241.E7DN82_BPDP1	112.0	1.48e-26	DNA polymerase III, delta subunit	N/A
Pfam	UHGV-1435050_39	PF13177	N/A	N/A	DNA polymerase III, delta subunit	DNA_pol3_delta2
structural_annotation	UHGV-1435050_39	PF13177,MF_04162,NF004047,COG2812	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_40	K02343	350.4	0	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	N/A
PHROG	UHGV-1435050_40	phrog_5846	301.2	0	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_40	UniRef90_A0A1U9WR94	325.0	0	DNA polymerase III subunits gamma and tau	N/A
eggNOG-mapper	UHGV-1435050_40	59241.E7DN81_BPDP1	306.0	0	four-way junction helicase activity	N/A
Pfam	UHGV-1435050_40	PF13177	N/A	N/A	DNA polymerase III, delta subunit	DNA_pol3_delta2
Pfam	UHGV-1435050_40	PF12169	N/A	N/A	DNA polymerase III subunits gamma and tau domain III	DNA_pol3_gamma3
NCBIFam	UHGV-1435050_40	TIGR02397.1	N/A	N/A	DNA polymerase III subunit gamma/tau	N/A
structural_annotation	UHGV-1435050_40	PF13177,PF12169,PF17864,MF_01509,NF004046,COG2812	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_41	K03698	51.1	0.000000000000022	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-1435050_41	phrog_28876	173.7	0	metal-dependent phosphohydrolase	other
UniRef90	UHGV-1435050_41	UniRef90_A0A316SF73	158.0	2.8026e-45	Hydrolase	N/A
eggNOG-mapper	UHGV-1435050_41	1443122.Z958_05750	146.0	1.10002e-41	PFAM HD domain	N/A
COG	UHGV-1435050_41	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1435050_41	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_42	phrog_2002	75.9	3.9e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1435050_42	871584.D9ZNI6_9CAUD	77.8	4.88e-17	N/A	N/A
structural_annotation	UHGV-1435050_42	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_43	K03091	81.9	1.3e-23	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-1435050_43	phrog_351	50.0	1.5e-19	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-1435050_43	UniRef90_A0A3D1VIF5	67.0	0.000000000549	RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1435050_43	420246.GTNG_2470	60.8	0.0000000156	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
Pfam	UHGV-1435050_43	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-1435050_43	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1435050_43	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1435050_43	PF07638,MF_02064,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_44	K03553	143.4	0	recA; recombination protein RecA	N/A
PHROG	UHGV-1435050_44	phrog_97	231.6	0	UvsX-like recombinase	other
UniRef90	UHGV-1435050_44	UniRef90_D9ZNJ5	357.0	0	Putative RecA protein	N/A
eggNOG-mapper	UHGV-1435050_44	871584.D9ZNJ5_9CAUD	357.0	0	DNA-dependent ATPase activity	N/A
Pfam	UHGV-1435050_44	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
structural_annotation	UHGV-1435050_44	PF00154,PF21096,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_45	K01520	67.6	2e-19	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1435050_45	phrog_135	82.2	6.3e-24	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_45	UniRef90_I1TK04	139.0	4.18e-39	dUTPase domain-containing protein	N/A
eggNOG-mapper	UHGV-1435050_45	1147137.I1TK04_9CAUD	139.0	7.02e-40	dUTPase	N/A
Pfam	UHGV-1435050_45	PF00692	N/A	N/A	dUTPase	dUTPase
structural_annotation	UHGV-1435050_45	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_49	phrog_843	63.0	3.8e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_49	UniRef90_UPI001C27770B	86.3	4.86e-18	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1435050_49	59241.E7DN76_BPDP1	59.7	0.00000000745	Recombination protein U	N/A
structural_annotation	UHGV-1435050_49	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_50	K07464	52.0	0.000000000000014	cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]	N/A
PHROG	UHGV-1435050_50	phrog_1706	162.1	0	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_50	UniRef90_A0A1U9WRA8	182.0	0	RecB	N/A
eggNOG-mapper	UHGV-1435050_50	871584.D9ZNH8_9CAUD	214.0	0	nuclease activity	N/A
Pfam	UHGV-1435050_50	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-1435050_50	PF10926,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_51	K02338	75.4	8.5e-22	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-1435050_51	phrog_947	80.7	1.6e-23	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_51	UniRef90_E7DN74	178.0	0	DnaN	N/A
eggNOG-mapper	UHGV-1435050_51	59241.E7DN74_BPDP1	178.0	0	3'-5' exonuclease activity	N/A
Pfam	UHGV-1435050_51	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
structural_annotation	UHGV-1435050_51	PF00712,PF02768,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_52	phrog_887	180.9	0	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1435050_52	UniRef90_E7DN71	251.0	0	Queuosine tRNA-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1435050_52	59241.E7DN71_BPDP1	251.0	0	tRNA modification	N/A
structural_annotation	UHGV-1435050_52	PF00290,MF_01634,TIGR00432,COG0343	N/A	N/A	N/A	N/A
PHROG	UHGV-1435050_53	phrog_27044	101.0	1.2e-29	N/A	unknown function
UniRef90	UHGV-1435050_53	UniRef90_A0A386H428	140.0	2.53e-39	QueT transporter family protein	N/A
eggNOG-mapper	UHGV-1435050_53	1121342.AUCO01000006_gene2485	137.0	5.33e-39	N/A	N/A
Pfam	UHGV-1435050_53	PF06177	N/A	N/A	QueT transporter	QueT
COG	UHGV-1435050_53	COG4708	N/A	N/A	ECF-type transporter of queuosine precursor, membrane (S) component	N/A
KOfam	UHGV-1435050_54	K06936	41.9	0.0000000000089	raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]	N/A
UniRef90	UHGV-1435050_54	UniRef90_W6N6L7	211.0	0	Radical SAM-superfamily protein	N/A
eggNOG-mapper	UHGV-1435050_54	1121342.AUCO01000006_gene2484	211.0	0	N/A	N/A
COG	UHGV-1435050_54	COG1244	N/A	N/A	Archaeosine formation enzyme, radical SAM superfamily	N/A
structural_annotation	UHGV-1435050_54	MF_03128,TIGR01210,COG1244	N/A	N/A	N/A	N/A
KOfam	UHGV-1435050_55	K02335	278.7	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-1435050_55	phrog_17	313.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435050_55	UniRef90_E7DND5	484.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-1435050_55	59241.E7DND5_BPDP1	484.0	0	DNA polymerase family A	N/A
PADLOC	UHGV-1435050_55	drt-cluster58	68.9	1.4e-27	DRT	DRT
Pfam	UHGV-1435050_55	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1435050	Yes	38,435	33	58	1