vOTU vOTU-113522

vOTU: vOTU-113522

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113522
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_I → Eubacterium_I ramulus
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-01578 → vGENUS-15339 → vOTU-113522
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_I → Eubacterium_I ramulus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0048293
Biosample ID	N/A
Genome length (bp)	23,423 bps
CheckV completeness	60.64% (Medium-quality)
CDS count	38
CDS density	91.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	5	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_I → Eubacterium_I ramulus	Total connections	26	Host agreement	96.15

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0048293_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0048293_1	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_2	phrog_533	191.9	0	portal protein	head and packaging
UniRef90	UHGV-0048293_2	UniRef90_A0A173UN39	929.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0048293_2	1160721.RBI_II00542	148.0	1.03e-36	N/A	N/A
Pfam	UHGV-0048293_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0048293_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0048293_3	K06909	227.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0048293_3	phrog_5653	103.1	1.9e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0048293_3	UniRef90_A0A173ULR4	1112.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0048293_3	1123511.KB905868_gene187	271.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0048293_3	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0048293_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0048293_3	PF04466,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048293_4	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_5	phrog_32322	60.3	3e-17	N/A	unknown function
UniRef90	UHGV-0048293_5	UniRef90_A0A173UQD8	195.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0048293_5	1256908.HMPREF0373_00675	171.0	0	N/A	N/A
Pfam	UHGV-0048293_5	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0048293_5	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0048293_6	K13276	78.4	3e-24	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0048293_6	phrog_11157	255.9	0	N/A	unknown function
UniRef90	UHGV-0048293_6	UniRef90_A0A173UNA5	659.0	0	Bacillopeptidase F	N/A
eggNOG-mapper	UHGV-0048293_6	1256908.HMPREF0373_00674	626.0	0	N/A	N/A
Pfam	UHGV-0048293_6	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0048293_6	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0048293_6	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0048293_6	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_7	phrog_5763	87.4	1.9e-25	N/A	unknown function
UniRef90	UHGV-0048293_7	UniRef90_UPI0018AC7B66	63.2	0.000000142	CvpA family protein	N/A
eggNOG-mapper	UHGV-0048293_7	999413.HMPREF1094_00199	64.3	0.00000000865	N/A	N/A
PHROG	UHGV-0048293_8	phrog_1281	123.0	1.2e-36	N/A	unknown function
UniRef90	UHGV-0048293_8	UniRef90_A0A564ULL5	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048293_8	1123263.AUKY01000111_gene1090	105.0	1.5e-26	N/A	N/A
Pfam	UHGV-0048293_8	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0048293_8	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048293_8	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_9	phrog_36	55.5	0.0000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0048293_9	UniRef90_A0A3D3U8Q6	121.0	1.33e-32	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0048293_9	1256908.HMPREF0373_00671	247.0	0	N/A	N/A
structural_annotation	UHGV-0048293_9	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_11	phrog_20593	55.0	3.3e-16	N/A	unknown function
UniRef90	UHGV-0048293_12	UniRef90_R5TJQ4	148.0	2.8026e-45	Carbamoyl-phosphate synthase L chain ATP-binding protein	N/A
COG	UHGV-0048293_12	COG1038	N/A	N/A	Pyruvate carboxylase	N/A
PHROG	UHGV-0048293_14	phrog_15077	95.1	6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0048293_14	1235792.C808_00069	337.0	0	N/A	N/A
structural_annotation	UHGV-0048293_14	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_16	phrog_8470	238.1	0	N/A	unknown function
UniRef90	UHGV-0048293_16	UniRef90_UPI000CDA663D	903.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0048293_16	999413.HMPREF1094_04705	550.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0048293_16	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0048293_16	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048293_17	1235792.C808_00065	239.0	0	N/A	N/A
structural_annotation	UHGV-0048293_18	PF12286,MF_00839,NF007780	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048293_19	PF05641	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_20	phrog_7566	103.3	8.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0048293_20	1235800.C819_00511	130.0	4.63e-37	N/A	N/A
KOfam	UHGV-0048293_21	K03111	140.6	1.90002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0048293_21	phrog_44	131.6	6.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048293_21	UniRef90_A0A173UNZ4	283.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0048293_21	411468.CLOSCI_01483	199.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0048293_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0048293_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0048293_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0048293_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0048293_21	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0048293_22	K03469	67.9	2.1e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0048293_22	phrog_531	62.2	5.9e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048293_22	UniRef90_A0A173UM21	323.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0048293_22	1235790.C805_03782	88.2	4.94e-20	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0048293_22	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0048293_22	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0048293_22	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_23	phrog_3584	163.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0048293_23	1280698.AUJS01000007_gene1013	358.0	0	N/A	N/A
structural_annotation	UHGV-0048293_23	PF01446	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048293_25	PF16311,NF002796	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_28	phrog_585	107.3	1.1e-31	N/A	unknown function
UniRef90	UHGV-0048293_28	UniRef90_A0A7G5MSN3	130.0	1.38e-36	N/A	N/A
eggNOG-mapper	UHGV-0048293_28	1033744.CAEL01000029_gene1306	118.0	4.02e-32	N/A	N/A
Pfam	UHGV-0048293_28	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0048293_28	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0048293_31	UniRef90_A0A4P9C894	80.5	2.03e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0048293_31	97139.C824_00059	81.3	1.52e-19	N/A	N/A
structural_annotation	UHGV-0048293_31	PF13443,NF010465,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_32	phrog_3	43.0	0.000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-0048293_32	UniRef90_A0A173UP67	218.0	0	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0048293_32	1235798.C817_04757	101.0	7.71e-26	N/A	N/A
Pfam	UHGV-0048293_32	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0048293_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0048293_32	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048293_33	411461.DORFOR_00034	179.0	0	N/A	N/A
structural_annotation	UHGV-0048293_33	PF11631,TIGR03066	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_34	phrog_87	78.9	5.8e-23	metallo-protease	other
UniRef90	UHGV-0048293_34	UniRef90_A0A2V1JW48	227.0	0	Membrane protein	N/A
eggNOG-mapper	UHGV-0048293_34	1256908.HMPREF0373_00642	205.0	0	Zn peptidase	N/A
Pfam	UHGV-0048293_34	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0048293_34	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0048293_34	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_35	phrog_7115	133.7	7.4e-40	N/A	unknown function
UniRef90	UHGV-0048293_35	UniRef90_A0A173UN76	246.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0048293_35	476272.RUMHYD_02184	195.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0048293_35	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0048293_35	PF08000,MF_00437	N/A	N/A	N/A	N/A
PHROG	UHGV-0048293_37	phrog_5978	249.6	0	N/A	unknown function
UniRef90	UHGV-0048293_37	UniRef90_A0A173UMR9	749.0	0	Fic/DOC family	N/A
eggNOG-mapper	UHGV-0048293_37	411465.PEPMIC_00508	434.0	0	Fic/DOC family	N/A
Pfam	UHGV-0048293_37	PF13784	N/A	N/A	Fic/DOC family N-terminal	Fic_N
Pfam	UHGV-0048293_37	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0048293_37	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0048293_37	PF02661,PF13784,PF21248,MF_01819,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0048293_38	K06400	243.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0048293_38	phrog_95	276.8	0	integrase	integration and excision
UniRef90	UHGV-0048293_38	UniRef90_U2RFE5	1041.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0048293_38	1256908.HMPREF0373_00206	1041.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0048293_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0048293_38	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0048293_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0048293_38	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0048293	Yes	23,423	41	61	1