vOTU vOTU-113717

vOTU: vOTU-113717

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113717
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-03319 → vOTU-113717
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2162023
Biosample ID	SAMEA3449280
Genome length (bp)	38,215 bps
CheckV completeness	87.46% (Medium-quality)
CDS count	56
CDS density	91.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	4	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2162023_1	K07273	90.3	2.6e-26	acm; lysozyme	N/A
PHROG	UHGV-2162023_1	phrog_291	72.2	8.8e-21	endolysin	lysis
UniRef90	UHGV-2162023_1	UniRef90_A0A8D9UIP9	130.0	6.21e-32	Lysozyme	N/A
eggNOG-mapper	UHGV-2162023_1	411460.RUMTOR_01337	102.0	4.4e-22	lysozyme activity	N/A
Pfam	UHGV-2162023_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2162023_1	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-2162023_2	phrog_937	48.3	0.00000000000019	hemolysin	other
eggNOG-mapper	UHGV-2162023_2	693746.OBV_19000	52.0	0.000000238	N/A	N/A
PHROG	UHGV-2162023_3	phrog_10091	110.7	9.1e-33	holin	lysis
UniRef90	UHGV-2162023_3	UniRef90_A0A1C5RHU1	140.0	5.07971e-42	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-2162023_3	428127.EUBDOL_01206	126.0	4.6e-37	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-2162023_3	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-2162023_3	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-2162023_3	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2162023_3	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162023_5	871968.DESME_08840	370.0	0	N/A	N/A
KOfam	UHGV-2162023_6	K14059	245.1	0	int; integrase	N/A
PHROG	UHGV-2162023_6	phrog_1	229.0	0	integrase	integration and excision
UniRef90	UHGV-2162023_6	UniRef90_A0A1C5SM44	530.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-2162023_6	1235797.C816_00779	191.0	0	Phage integrase family	N/A
Pfam	UHGV-2162023_6	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2162023_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2162023_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2162023_6	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2162023_7	UniRef90_A0A542AKI0	90.9	2.34e-20	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-2162023_7	1031288.AXAA01000014_gene407	68.2	0.00000000000245	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-2162023_7	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_8	K15773	50.5	0.000000000000043	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-2162023_8	phrog_2339	47.8	0.00000000000016	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_8	UniRef90_A0A1C5P764	182.0	0	Antitoxin HipB	N/A
eggNOG-mapper	UHGV-2162023_8	748224.HMPREF9436_03379	60.8	0.000000000644	sequence-specific DNA binding	N/A
Pfam	UHGV-2162023_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2162023_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-2162023_9	UniRef90_A0A1G5XTR8	61.2	0.00000000208	Phage derived protein Gp49-like	N/A
structural_annotation	UHGV-2162023_9	PF05973,TIGR02683,COG3657	N/A	N/A	N/A	N/A
UniRef90	UHGV-2162023_10	UniRef90_A0A180EU70	146.0	1.76984e-42	Virulence protein	N/A
eggNOG-mapper	UHGV-2162023_10	1069080.KB913028_gene1371	139.0	1.02e-38	N/A	N/A
Pfam	UHGV-2162023_10	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-2162023_10	COG3943	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162023_12	1235796.C815_00408	53.5	0.00000913	sequence-specific DNA binding	N/A
COG	UHGV-2162023_12	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
PHROG	UHGV-2162023_14	phrog_8	61.4	2.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2162023_14	UniRef90_A0A3A8WFP7	123.0	7.3e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2162023_14	1235797.C816_00878	92.0	2.66e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2162023_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2162023_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-2162023_16	K07729	58.4	1.6e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2162023_16	phrog_3	46.6	0.0000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-2162023_16	UniRef90_UPI00068099B2	91.7	3.78e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2162023_16	1226325.HMPREF1548_03113	58.5	0.000000000246	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-2162023_16	retron_type_VI_hth_cluster2_1	45.6	0.0000000000021	N/A	Retron
Pfam	UHGV-2162023_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2162023_16	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2162023_17	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_20	phrog_14970	241.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2162023_20	411470.RUMGNA_02193	210.0	0	double-strand break repair protein	N/A
Pfam	UHGV-2162023_20	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-2162023_20	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-2162023_20	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_21	phrog_72	58.2	1.1e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_21	UniRef90_UPI001F3F3E5C	196.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-2162023_21	445972.ANACOL_01825	119.0	1.2e-31	N/A	N/A
structural_annotation	UHGV-2162023_21	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_22	phrog_7566	68.6	7e-20	N/A	unknown function
eggNOG-mapper	UHGV-2162023_22	693746.OBV_24070	67.4	0.000000000000446	N/A	N/A
KOfam	UHGV-2162023_23	K03111	131.9	7.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2162023_23	phrog_44	132.2	3.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_23	UniRef90_A0A6S6XCU6	180.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2162023_23	1105031.HMPREF1141_2832	167.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2162023_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2162023_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2162023_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2162023_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2162023_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_24	phrog_16304	54.5	4.5e-16	N/A	unknown function
UniRef90	UHGV-2162023_24	UniRef90_A0A3D3Y5P0	92.8	4.02e-19	N/A	N/A
Pfam	UHGV-2162023_24	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-2162023_24	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_25	K02314	277.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-2162023_25	phrog_19	269.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_25	UniRef90_A0A1Y4EVJ1	458.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-2162023_25	411471.SUBVAR_05838	169.0	5.60519e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2162023_25	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-2162023_25	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-2162023_25	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2162023_25	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_27	K01160	49.1	0.00000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2162023_27	phrog_1682	89.7	4e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_27	UniRef90_A7VTC7	178.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-2162023_27	428125.CLOLEP_01819	178.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-2162023_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2162023_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2162023_27	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_29	K00558	51.2	0.0000000000000071	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2162023_29	phrog_363	79.9	2.1e-23	DNA methyltransferase	other
UniRef90	UHGV-2162023_29	UniRef90_A0A1Y4W2J0	148.0	1.03e-39	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2162023_29	742738.HMPREF9460_04053	155.0	2.81661e-43	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2162023_29	MTase_II_00058	46.1	0.00000000000098	Type II methyltransferase	RM
Pfam	UHGV-2162023_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2162023_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2162023_29	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_30	K00571	179.3	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2162023_30	phrog_498	94.0	1.3e-27	DNA methyltransferase	other
UniRef90	UHGV-2162023_30	UniRef90_A0A431IA37	270.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2162023_30	479437.Elen_2607	144.0	1.99e-39	DNA methylase	N/A
PADLOC	UHGV-2162023_30	MTase_II_00014	96.1	7.1e-28	Type II methyltransferase	RM
Pfam	UHGV-2162023_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2162023_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2162023_30	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162023_31	411473.RUMCAL_00255	87.4	8.48e-22	N/A	N/A
structural_annotation	UHGV-2162023_31	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_32	phrog_1891	89.2	3.7e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2162023_32	UniRef90_A0A4Z0YED2	129.0	2.28e-34	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-2162023_32	1197952.I6T7L3_9CAUD	82.8	4.27e-17	HNH endonuclease	N/A
Pfam	UHGV-2162023_32	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-2162023_32	PF13392	N/A	N/A	N/A	N/A
UniRef90	UHGV-2162023_33	UniRef90_UPI001C3A10B1	68.9	0.000000000000355	Zinc ribbon domain-containing protein	N/A
Pfam	UHGV-2162023_33	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-2162023_38	phrog_36	77.1	2.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-2162023_38	UniRef90_A0A3D3FGT2	117.0	4.4e-31	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2162023_38	1232443.BAIA02000106_gene3115	71.2	0.0000000000000433	N/A	N/A
Pfam	UHGV-2162023_38	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-2162023_38	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_40	K07474	144.2	1.3999e-42	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2162023_40	phrog_51	131.6	3.6e-39	terminase small subunit	head and packaging
UniRef90	UHGV-2162023_40	UniRef90_UPI001D05F697	135.0	3.11e-38	terminase small subunit	N/A
eggNOG-mapper	UHGV-2162023_40	997346.HMPREF9374_1124	115.0	1.43e-30	Terminase small subunit	N/A
Pfam	UHGV-2162023_40	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2162023_40	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2162023_40	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_41	K06909	43.7	0.000000000003	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2162023_41	phrog_2	114.1	2e-33	terminase large subunit	head and packaging
UniRef90	UHGV-2162023_41	UniRef90_UPI001F401ABC	595.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-2162023_41	1408437.JNJN01000002_gene1397	149.0	3.39e-37	Phage terminase large subunit	N/A
COG	UHGV-2162023_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2162023_41	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162023_44	999413.HMPREF1094_04343	127.0	5.34e-35	N/A	N/A
structural_annotation	UHGV-2162023_44	PF18847,NF002761,COG1847	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_45	phrog_13890	61.1	1.3e-17	N/A	unknown function
UniRef90	UHGV-2162023_45	UniRef90_A0A1Y4ITT4	84.7	2.58e-20	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-2162023_45	1378168.N510_03076	79.3	5.9e-19	N/A	N/A
structural_annotation	UHGV-2162023_45	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
UniRef90	UHGV-2162023_46	UniRef90_A0A6N2R591	266.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-2162023_46	1514668.JOOA01000001_gene692	247.0	0	zeta toxin	N/A
Pfam	UHGV-2162023_46	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-2162023_46	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-2162023_46	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_47	phrog_156	232.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-2162023_47	693746.OBV_23930	463.0	0	N/A	N/A
structural_annotation	UHGV-2162023_47	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_50	phrog_35275	101.8	6e-30	N/A	unknown function
eggNOG-mapper	UHGV-2162023_50	1226322.HMPREF1545_03846	95.9	4.09e-20	N/A	N/A
PHROG	UHGV-2162023_51	phrog_24113	74.7	9.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-2162023_51	1226322.HMPREF1545_03847	66.6	0.00000000000329	N/A	N/A
structural_annotation	UHGV-2162023_51	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_52	phrog_371	131.9	3.8e-39	major head protein	head and packaging
UniRef90	UHGV-2162023_52	UniRef90_A0A1Y4TDW7	504.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-2162023_52	1226322.HMPREF1545_03848	297.0	0	N/A	N/A
Pfam	UHGV-2162023_52	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-2162023_52	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_53	phrog_13046	52.7	0.0000000000000059	N/A	unknown function
eggNOG-mapper	UHGV-2162023_53	1232449.BAHV02000016_gene1817	115.0	2.18e-29	N/A	N/A
structural_annotation	UHGV-2162023_53	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-2162023_54	phrog_3287	153.5	1.4013e-45	virion structural protein	head and packaging
eggNOG-mapper	UHGV-2162023_54	665956.HMPREF1032_03917	744.0	0	N/A	N/A
structural_annotation	UHGV-2162023_54	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-2162023_55	K19721	89.4	1.1e-26	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-2162023_55	phrog_819	116.4	1.5e-34	tail protein	tail
UniRef90	UHGV-2162023_55	UniRef90_UPI00164C9345	223.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-2162023_55	1203606.HMPREF1526_02029	75.1	0.0000000000206	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-2162023_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-2162023_55	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
KOfam	UHGV-2162023_56	K07273	93.3	3.2e-27	acm; lysozyme	N/A
PHROG	UHGV-2162023_56	phrog_6745	69.2	5.5e-20	endolysin	lysis
UniRef90	UHGV-2162023_56	UniRef90_A0A348P5Q3	93.2	5.81e-23	Glycoside hydrolase (Fragment)	N/A
eggNOG-mapper	UHGV-2162023_56	641112.ACOK01000108_gene1814	108.0	5.24e-28	hydrolase, family 25	N/A
Pfam	UHGV-2162023_56	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2162023_56	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2162023_56	PF01183	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2162023	Yes	38,215	48	87	1