vOTU vOTU-113819

vOTU: vOTU-113819

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-113819
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-05566 → vOTU-113819
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_J → Clostridium_J sp000821305
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0048056
Biosample ID	N/A
Genome length (bp)	20,061 bps
CheckV completeness	52.01% (Medium-quality)
CDS count	34
CDS density	90.25%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_J → Clostridium_J sp000821305	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0048056_1	phrog_1272	184.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0048056_1	UniRef90_A0A371ARP8	461.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0048056_1	665956.HMPREF1032_00108	448.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0048056_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0048056_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0048056_1	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0048056_1	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_2	phrog_29863	79.4	3.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0048056_2	755731.Clo1100_0553	79.0	8.66e-18	N/A	N/A
PHROG	UHGV-0048056_3	phrog_2175	92.1	6.7e-27	protein with Ig domain	other
eggNOG-mapper	UHGV-0048056_3	1415774.U728_1247	267.0	0	N/A	N/A
structural_annotation	UHGV-0048056_3	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048056_4	1235790.C805_01797	52.0	0.000000399	N/A	N/A
structural_annotation	UHGV-0048056_4	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048056_5	1415774.U728_1249	137.0	3.21e-40	N/A	N/A
Pfam	UHGV-0048056_5	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0048056_5	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_6	phrog_19734	93.4	2.4e-27	N/A	unknown function
UniRef90	UHGV-0048056_6	UniRef90_UPI00057FE645	114.0	1.34e-30	phage head closure protein	N/A
eggNOG-mapper	UHGV-0048056_6	86416.Clopa_0343	149.0	4.2039e-45	N/A	N/A
PHROG	UHGV-0048056_7	phrog_749	69.1	5.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0048056_7	1415774.U728_1251	134.0	1.14e-39	N/A	N/A
PHROG	UHGV-0048056_8	phrog_10	112.0	6.7e-33	major head protein	head and packaging
UniRef90	UHGV-0048056_8	UniRef90_UPI001B3679C2	681.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0048056_8	1415774.U728_1252	500.0	0	Phage capsid family	N/A
Pfam	UHGV-0048056_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0048056_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0048056_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0048056_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0048056_9	K01358	129.6	3.3e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0048056_9	phrog_94	218.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0048056_9	UniRef90_A0A1B9BRV5	358.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0048056_9	86416.Clopa_0340	310.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0048056_9	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0048056_9	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0048056_9	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_10	phrog_12	124.7	6.1e-37	portal protein	head and packaging
UniRef90	UHGV-0048056_10	UniRef90_A0A1B9BRS1	573.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0048056_10	1211817.CCAT010000053_gene2130	526.0	0	Phage portal protein	N/A
Pfam	UHGV-0048056_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0048056_10	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0048056_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0048056_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_12	phrog_9	297.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0048056_12	UniRef90_A0A3D3TQL2	1018.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0048056_12	86416.Clopa_0337	900.0	0	Phage Terminase	N/A
Pfam	UHGV-0048056_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0048056_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0048056_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0048056_12	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_13	phrog_5110	93.9	1.1e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0048056_13	UniRef90_A0A4U7JDP0	147.0	4.48416e-44	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0048056_13	86416.Clopa_0336	134.0	7.84e-40	N/A	N/A
Pfam	UHGV-0048056_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0048056_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0048056_14	195103.CPF_1592	51.2	0.000000109	N/A	N/A
PHROG	UHGV-0048056_15	phrog_36	56.7	5.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0048056_15	UniRef90_A0A5N7IQ79	109.0	6.63e-28	N/A	N/A
eggNOG-mapper	UHGV-0048056_15	1443125.Z962_12420	94.4	1.32e-22	N/A	N/A
structural_annotation	UHGV-0048056_17	PF11680	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0048056_21	PF09630,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_22	phrog_986	115.0	4.3e-34	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048056_22	UniRef90_UPI000B0049A2	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048056_22	1499683.CCFF01000005_gene42	256.0	0	N/A	N/A
Pfam	UHGV-0048056_22	PF12961	N/A	N/A	N/A	DUF3850
KOfam	UHGV-0048056_26	K03111	146.1	3.60134e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0048056_26	phrog_44	146.8	1.20512e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0048056_26	UniRef90_UPI00058B7F4C	208.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0048056_26	1499683.CCFF01000012_gene1162	208.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0048056_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0048056_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0048056_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0048056_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0048056_26	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_27	phrog_5164	69.4	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0048056_27	1196322.A370_02842	63.5	0.000000000125	N/A	N/A
UniRef90	UHGV-0048056_28	UniRef90_A0A4U9RDW9	94.4	1.7e-22	N/A	N/A
eggNOG-mapper	UHGV-0048056_28	318464.IO99_13800	167.0	0	endonuclease activity	N/A
COG	UHGV-0048056_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0048056_28	COG5126	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_29	phrog_15609	196.7	0	N/A	unknown function
UniRef90	UHGV-0048056_29	UniRef90_UPI000FDC6BB8	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0048056_29	1395513.P343_08065	163.0	4.2039e-45	N/A	N/A
Pfam	UHGV-0048056_29	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0048056_29	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0048056_29	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_30	phrog_8470	167.1	0	N/A	unknown function
UniRef90	UHGV-0048056_30	UniRef90_A0A2V2YSA1	129.0	3.92e-30	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0048056_30	1395513.P343_08065	164.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0048056_30	PF11300	N/A	N/A	N/A	DUF3102
Pfam	UHGV-0048056_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
COG	UHGV-0048056_30	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
PHROG	UHGV-0048056_31	phrog_8470	346.0	0	N/A	unknown function
UniRef90	UHGV-0048056_31	UniRef90_UPI001409E5A2	388.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0048056_31	649747.HMPREF0083_05326	366.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0048056_31	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0048056_31	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0048056_32	phrog_8470	138.4	5.40004e-41	N/A	unknown function
UniRef90	UHGV-0048056_32	UniRef90_A0A890FBA8	189.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0048056_32	649747.HMPREF0083_05326	190.0	0	PcfJ-like protein	N/A
PHROG	UHGV-0048056_33	phrog_7445	41.2	0.000000000026	N/A	unknown function
UniRef90	UHGV-0048056_33	UniRef90_UPI001C0B1566	86.3	3.17e-19	PcfK-like family protein	N/A
eggNOG-mapper	UHGV-0048056_33	913865.DOT_1302	65.1	0.00000000000847	N/A	N/A
structural_annotation	UHGV-0048056_33	PF14058	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0048056	Yes	20,061	32	52	1