vOTU vOTU-114627

vOTU: vOTU-114627

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-114627
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00755 → vGENUS-00618 → vOTU-114627
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Coprococcus_A → Coprococcus_A sp900548825
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1378061
Biosample ID	SAMEA3664778
Genome length (bp)	23,590 bps
CheckV completeness	56.79% (Medium-quality)
CDS count	44
CDS density	90.95%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Coprococcus_A → Coprococcus_A sp900548825	Total connections	30	Host agreement	93.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1378061_2	phrog_538	147.9	7.56701e-44	minor tail protein	tail
UniRef90	UHGV-1378061_2	UniRef90_UPI001E2C8064	207.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1378061_2	742723.HMPREF9477_00895	190.0	0	N/A	N/A
Pfam	UHGV-1378061_2	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1378061_2	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_3	phrog_13141	134.2	1.1e-39	N/A	unknown function
UniRef90	UHGV-1378061_3	UniRef90_A0A7K3I4P1	102.0	1.03e-21	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1378061_3	1256908.HMPREF0373_00465	100.0	1.3e-21	N/A	N/A
Pfam	UHGV-1378061_3	PF09458	N/A	N/A	H-type lectin domain	H_lectin
structural_annotation	UHGV-1378061_3	PF20747,PF09458,NF012201	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378061_5	742733.HMPREF9469_05009	60.5	0.0000000129	N/A	N/A
structural_annotation	UHGV-1378061_5	PF16990,NF033147,COG4935	N/A	N/A	N/A	N/A
KOfam	UHGV-1378061_7	K10804	40.2	0.000000000024	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-1378061_7	PF00657	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
PHROG	UHGV-1378061_9	phrog_1863	54.1	6.4e-16	N/A	unknown function
UniRef90	UHGV-1378061_9	UniRef90_UPI001D0865D2	95.5	6.1e-24	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1378061_9	1226322.HMPREF1545_04027	68.9	0.0000000000000249	N/A	N/A
PHROG	UHGV-1378061_10	phrog_443	60.9	3.3e-17	holin	lysis
UniRef90	UHGV-1378061_10	UniRef90_UPI000C75746C	110.0	2.87e-30	holin	N/A
eggNOG-mapper	UHGV-1378061_10	626523.GCWU000342_01012	85.5	6.02e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1378061_10	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1378061_10	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378061_11	UniRef90_UPI001D091A6B	350.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1378061_11	1042156.CXIVA_01560	73.9	0.00000000000109	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1378061_11	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-1378061_11	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1378061_11	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1378061_11	PF03412,PF01471,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_13	phrog_3754	79.6	4.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1378061_13	476272.RUMHYD_01764	154.0	0	N/A	N/A
PHROG	UHGV-1378061_14	phrog_21718	79.1	6.1e-23	N/A	unknown function
UniRef90	UHGV-1378061_14	UniRef90_A0A285PT36	127.0	1.82e-34	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-1378061_14	397290.C810_05210	70.1	0.000000000000686	N/A	N/A
PHROG	UHGV-1378061_15	phrog_22984	61.3	1.6e-17	N/A	unknown function
PHROG	UHGV-1378061_16	phrog_16490	152.3	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1378061_16	1408437.JNJN01000043_gene803	89.0	2.07e-18	N/A	N/A
PHROG	UHGV-1378061_17	phrog_20016	214.1	0	N/A	unknown function
UniRef90	UHGV-1378061_17	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1378061_17	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-1378061_17	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378061_18	476272.RUMHYD_01772	63.2	0.000000000195	N/A	N/A
structural_annotation	UHGV-1378061_18	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378061_19	1226322.HMPREF1545_00079	52.8	0.000000294	N/A	N/A
PHROG	UHGV-1378061_22	phrog_2329	66.8	2.3e-19	N/A	unknown function
UniRef90	UHGV-1378061_22	UniRef90_UPI001033A0F9	73.9	4.37e-16	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
Pfam	UHGV-1378061_22	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
COG	UHGV-1378061_22	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-1378061_22	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_23	phrog_1271	48.2	0.00000000000028	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1378061_23	742738.HMPREF9460_04058	79.3	0.00000000000000502	N/A	N/A
eggNOG-mapper	UHGV-1378061_24	411470.RUMGNA_03785	59.3	0.00000000218	N/A	N/A
KOfam	UHGV-1378061_25	K06400	212.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1378061_25	phrog_95	237.4	0	integrase	integration and excision
UniRef90	UHGV-1378061_25	UniRef90_A0A1C6CR25	355.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1378061_25	1256908.HMPREF0373_00206	332.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1378061_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1378061_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1378061_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1378061_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1378061_25	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1378061_26	K22300	42.4	0.000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1378061_26	UniRef90_A0A810PZN0	169.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1378061_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1378061_26	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_28	phrog_806	45.3	0.0000000000015	N/A	unknown function
UniRef90	UHGV-1378061_28	UniRef90_UPI001D05E4A8	147.0	1.65998e-41	N/A	N/A
eggNOG-mapper	UHGV-1378061_28	411468.CLOSCI_01239	147.0	3.52006e-42	N/A	N/A
Pfam	UHGV-1378061_28	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-1378061_28	PF16729,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-1378061_29	K22300	58.5	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1378061_29	phrog_8	46.0	0.00000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-1378061_29	UniRef90_A0A6L6L9S1	114.0	3.35e-30	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1378061_29	742741.HMPREF9475_00400	102.0	1.81e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1378061_29	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1378061_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1378061_29	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378061_34	UniRef90_A0A2K4ZME2	60.5	0.0000000000918	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1378061_34	397288.C806_02998	58.5	0.0000000000911	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1378061_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1378061_34	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1378061_35	K07741	189.2	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1378061_35	phrog_63	162.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1378061_35	UniRef90_A0A1C5MD88	343.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1378061_35	658655.HMPREF0988_02592	286.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1378061_35	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1378061_35	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1378061_35	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1378061_35	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378061_36	UniRef90_A0A4R2LFA5	79.7	1.91e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1378061_36	500632.CLONEX_03572	72.8	2.25e-16	N/A	N/A
Pfam	UHGV-1378061_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1378061_36	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_41	phrog_434	163.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378061_41	UniRef90_A0A416VA03	325.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1378061_41	1095750.HMPREF9970_1677	314.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1378061_41	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1378061_41	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1378061_41	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1378061_41	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_42	phrog_674	129.2	2.9e-38	N/A	unknown function
UniRef90	UHGV-1378061_42	UniRef90_A0A6N7XHF2	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378061_42	1095750.HMPREF9970_1676	186.0	0	N/A	N/A
Pfam	UHGV-1378061_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1378061_42	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_43	phrog_2760	223.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378061_43	UniRef90_A0A3A6C308	338.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1378061_43	536233.CLO_0507	210.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1378061_43	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1378061_43	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1378061_43	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1378061_43	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1378061_44	phrog_4433	82.3	6.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1378061_44	445970.ALIPUT_01221	93.2	1.49e-19	DNA-templated transcription, initiation	N/A
COG	UHGV-1378061_44	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1378061	Yes	23,590	43	57	1