vOTU vOTU-114929

vOTU: vOTU-114929

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-114929
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-04950 → vOTU-114929
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1411313
Biosample ID	N/A
Genome length (bp)	16,285 bps
CheckV completeness	66.64% (Medium-quality)
CDS count	23
CDS density	96.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	889	Host agreement	82.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	77	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1411313_1	phrog_24518	48.5	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1411313_1	1519439.JPJG01000077_gene922	67.0	0.0000000000109	N/A	N/A
PHROG	UHGV-1411313_2	phrog_824	143.8	5.10073e-43	N/A	unknown function
UniRef90	UHGV-1411313_2	UniRef90_A0A3D3D6C6	245.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1411313_2	397288.C806_00096	155.0	0	VRR_NUC	N/A
Pfam	UHGV-1411313_2	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1411313_2	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_5	phrog_3584	150.3	1.26117e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1411313_5	1235800.C819_00515	70.9	0.00000000000973	N/A	N/A
structural_annotation	UHGV-1411313_5	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1411313_6	K22300	42.7	0.00000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1411313_6	phrog_8	51.8	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1411313_6	UniRef90_A0A412ULX1	137.0	4.52003e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1411313_6	226185.EF_1277	53.9	0.0000000555	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1411313_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1411313_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1411313_6	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_7	phrog_119	54.7	0.0000000000000014	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1411313_7	UniRef90_A0A374N9T6	248.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1411313_7	1235793.C809_01915	119.0	7.52e-33	HNH endonuclease	N/A
COG	UHGV-1411313_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1411313_8	phrog_1066	115.9	1.8e-34	N/A	unknown function
UniRef90	UHGV-1411313_8	UniRef90_A0A0D0SQQ8	86.7	1.76e-19	N/A	N/A
eggNOG-mapper	UHGV-1411313_8	1203606.HMPREF1526_00982	103.0	2.67e-27	N/A	N/A
PHROG	UHGV-1411313_9	phrog_9	392.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1411313_9	UniRef90_A0A374NB45	982.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1411313_9	1235793.C809_01917	728.0	0	Phage Terminase	N/A
Pfam	UHGV-1411313_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1411313_9	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1411313_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1411313_9	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_10	phrog_12	180.1	0	portal protein	head and packaging
UniRef90	UHGV-1411313_10	UniRef90_A0A374NAE1	767.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1411313_10	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-1411313_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1411313_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1411313_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1411313_11	K01358	122.1	6.2e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1411313_11	phrog_94	189.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1411313_11	UniRef90_A0A374NBM3	398.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1411313_11	1203606.HMPREF1526_00979	181.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1411313_11	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1411313_11	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1411313_11	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_12	phrog_10	151.5	7.00649e-45	major head protein	head and packaging
UniRef90	UHGV-1411313_12	UniRef90_A0A374N9V9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1411313_12	1280689.AUJC01000011_gene1521	330.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1411313_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1411313_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1411313_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1411313_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_13	phrog_5223	54.6	0.0000000000000015	neck protein	connector
NCBIFam	UHGV-1411313_13	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1411313_13	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_14	phrog_1951	93.1	1.7e-27	head-tail adaptor	connector
UniRef90	UHGV-1411313_14	UniRef90_A0A374MZF9	207.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1411313_14	1414720.CBYM010000040_gene1649	66.6	0.000000000000704	head-tail adaptor	N/A
COG	UHGV-1411313_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1411313_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1411313_15	UniRef90_UPI001A9B6FBF	160.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1411313_15	1414720.CBYM010000040_gene1650	127.0	1.03e-35	N/A	N/A
structural_annotation	UHGV-1411313_15	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1411313_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_17	phrog_885	138.4	3.89995e-41	major tail protein	tail
UniRef90	UHGV-1411313_17	UniRef90_A0A3D3W9F4	163.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1411313_17	1321814.HMPREF9089_00935	177.0	0	N/A	N/A
structural_annotation	UHGV-1411313_17	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_18	phrog_1021	45.3	0.000000000000063	N/A	unknown function
PHROG	UHGV-1411313_20	phrog_23464	252.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1411313_20	665950.HMPREF1025_02660	180.0	7.00649e-45	phage tail tape measure protein	N/A
COG	UHGV-1411313_20	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1411313_20	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1411313_21	UniRef90_A0A1G5CPA2	118.0	1.06e-28	Phage-related protein	N/A
eggNOG-mapper	UHGV-1411313_21	1246.JMEA01000006_gene51	75.1	0.00000000000027	phage tail	N/A
COG	UHGV-1411313_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1411313_21	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1411313_22	phrog_1067	145.1	3.9937e-43	minor head protein	head and packaging
UniRef90	UHGV-1411313_22	UniRef90_A0A348ZBV6	180.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1411313_22	1160721.RBI_I01574	129.0	1.5e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-1411313_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1411313_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1411313_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1411313_22	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1411313_23	UniRef90_A0A374N9Y2	381.0	0	N/A	N/A
Pfam	UHGV-1411313_23	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1411313_23	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1411313	Yes	16,285	42	67	1