vOTU vOTU-114959

vOTU: vOTU-114959

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-114959
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00099 → vGENUS-16085 → vOTU-114959
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0392650
Biosample ID	N/A
Genome length (bp)	29,035 bps
CheckV completeness	78.02% (Medium-quality)
CDS count	45
CDS density	91.29%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	275	Host agreement	84.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0392650_3	PF02895	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_4	phrog_15198	45.4	8.7e-25	N/A	unknown function
UniRef90	UHGV-0392650_4	UniRef90_UPI001D04EA1D	327.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392650_4	658655.HMPREF0988_00863	52.0	0.00000512	N/A	N/A
Pfam	UHGV-0392650_4	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0392650_4	PF04448	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392650_6	411470.RUMGNA_02203	270.0	0	N/A	N/A
PHROG	UHGV-0392650_9	phrog_36	51.2	0.000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392650_9	UniRef90_A0A7X4ZQ48	132.0	3.03e-37	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0392650_9	1235792.C808_05360	125.0	2.73e-35	N/A	N/A
structural_annotation	UHGV-0392650_9	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_10	phrog_309	204.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0392650_10	UniRef90_A0A2N5PKF8	302.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0392650_10	411470.RUMGNA_02210	207.0	0	transposase activity	N/A
Pfam	UHGV-0392650_10	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0392650_10	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0392650_10	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0392650_11	K06909	82.2	7.7e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0392650_11	phrog_2	86.6	4.3e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0392650_11	UniRef90_A7B3T0	867.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0392650_11	411470.RUMGNA_02211	867.0	0	N/A	N/A
Pfam	UHGV-0392650_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0392650_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0392650_11	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_12	phrog_533	338.7	0	portal protein	head and packaging
UniRef90	UHGV-0392650_12	UniRef90_A7B3T1	878.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0392650_12	411470.RUMGNA_02212	878.0	0	N/A	N/A
structural_annotation	UHGV-0392650_12	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_13	phrog_581	334.3	0	minor head protein	head and packaging
UniRef90	UHGV-0392650_13	UniRef90_UPI001EE14397	622.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0392650_13	411470.RUMGNA_02213	731.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0392650_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0392650_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392650_13	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392650_14	411470.RUMGNA_02214	177.0	0	N/A	N/A
structural_annotation	UHGV-0392650_14	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392650_15	411470.RUMGNA_02215	325.0	0	N/A	N/A
NCBIFam	UHGV-0392650_17	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0392650_17	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_18	phrog_194	108.3	8.5e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-0392650_18	UniRef90_A5KPA4	304.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0392650_18	411470.RUMGNA_02218	322.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0392650_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0392650_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_19	phrog_422	210.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0392650_19	411470.RUMGNA_02219	543.0	0	N/A	N/A
structural_annotation	UHGV-0392650_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_20	phrog_541	101.7	5.2e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0392650_20	658655.HMPREF0988_02559	202.0	0	N/A	N/A
PHROG	UHGV-0392650_21	phrog_3366	97.3	5.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0392650_21	411470.RUMGNA_02221	209.0	0	N/A	N/A
Pfam	UHGV-0392650_21	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0392650_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_22	phrog_556	141.9	1.60028e-42	minor head protein	head and packaging
UniRef90	UHGV-0392650_22	UniRef90_UPI001C8E2A32	236.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0392650_22	411470.RUMGNA_02222	238.0	0	N/A	N/A
structural_annotation	UHGV-0392650_22	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_23	phrog_3266	154.9	0	tail completion	connector
eggNOG-mapper	UHGV-0392650_23	411470.RUMGNA_02223	276.0	0	N/A	N/A
structural_annotation	UHGV-0392650_23	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_24	phrog_3099	154.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0392650_24	411470.RUMGNA_02224	288.0	0	N/A	N/A
structural_annotation	UHGV-0392650_24	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_25	phrog_4450	123.5	1e-36	N/A	unknown function
UniRef90	UHGV-0392650_25	UniRef90_UPI001C0AC01D	77.4	5.5e-16	AP endonuclease	N/A
eggNOG-mapper	UHGV-0392650_25	1235792.C808_05374	145.0	1.96182e-43	N/A	N/A
Pfam	UHGV-0392650_25	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0392650_25	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_26	phrog_706	161.3	0	N/A	unknown function
UniRef90	UHGV-0392650_26	UniRef90_UPI00129D4CEC	253.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0392650_26	411470.RUMGNA_02226	236.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0392650_26	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0392650_26	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_27	phrog_6900	250.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0392650_27	UniRef90_UPI001C8EB1BF	115.0	7.78e-23	tape measure protein	N/A
eggNOG-mapper	UHGV-0392650_27	742765.HMPREF9457_02136	339.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0392650_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392650_27	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_28	phrog_202	291.9	0	distal tail protein Dit	tail
UniRef90	UHGV-0392650_28	UniRef90_UPI0015703812	827.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0392650_28	411470.RUMGNA_02229	509.0	0	N/A	N/A
Pfam	UHGV-0392650_28	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0392650_28	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0392650_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0392650_28	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_29	phrog_588	495.0	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0392650_29	UniRef90_A7B3U9	1191.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0392650_29	411470.RUMGNA_02230	1191.0	0	N/A	N/A
Pfam	UHGV-0392650_29	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0392650_29	PF14594,PF19081,MF_04116,TIGR01665,NF041894,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392650_30	608534.GCWU000341_02271	54.3	0.0000000306	N/A	N/A
PHROG	UHGV-0392650_31	phrog_10091	101.7	6e-30	holin	lysis
UniRef90	UHGV-0392650_31	UniRef90_A0A2N5P008	153.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0392650_31	428127.EUBDOL_01206	127.0	2.98e-37	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0392650_31	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0392650_31	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0392650_31	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392650_31	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0392650_32	K01447	61.1	2.1e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0392650_32	phrog_833	157.0	0	endolysin	lysis
UniRef90	UHGV-0392650_32	UniRef90_UPI000E52EE08	406.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0392650_32	411470.RUMGNA_03787	397.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-0392650_32	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0392650_32	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-0392650_32	PF01510,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0392650_33	K14059	157.7	0	int; integrase	N/A
PHROG	UHGV-0392650_33	phrog_1	153.5	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0392650_33	UniRef90_A0A3E4LWT3	515.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0392650_33	610130.Closa_1360	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0392650_33	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0392650_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0392650_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0392650_33	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_34	phrog_806	58.9	1.1e-16	N/A	unknown function
UniRef90	UHGV-0392650_34	UniRef90_S2YED8	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392650_34	411468.CLOSCI_01239	148.0	9.34666e-43	N/A	N/A
Pfam	UHGV-0392650_34	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0392650_34	PF16729,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0392650_36	K22300	42.3	0.000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0392650_36	phrog_8	49.2	0.000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392650_36	UniRef90_UPI001D04C7E1	184.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0392650_36	1235790.C805_00012	124.0	3.08e-35	Helix-turn-helix domain	N/A
Pfam	UHGV-0392650_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0392650_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0392650_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_39	phrog_28292	111.6	2.7e-33	N/A	unknown function
UniRef90	UHGV-0392650_39	UniRef90_A0A8B3BZ84	162.0	0	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-0392650_39	500632.CLONEX_01438	133.0	7.25e-40	N/A	N/A
KOfam	UHGV-0392650_40	K07741	107.4	3.1e-31	antB; anti-repressor protein	N/A
PHROG	UHGV-0392650_40	phrog_63	216.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0392650_40	UniRef90_UPI0015706F54	412.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0392650_40	1582156.A0A0A8WJ71_9CAUD	237.0	0	DNA binding	N/A
Pfam	UHGV-0392650_40	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0392650_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0392650_40	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0392650_40	PF03374,PF09669,TIGR02681,COG3645,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0392650_43	UniRef90_A0A3E4LWT8	72.8	0.00000000000000388	HTH psq-type domain-containing protein	N/A
Pfam	UHGV-0392650_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0392650_43	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0392650_45	phrog_5070	144.0	5.60519e-43	N/A	unknown function
UniRef90	UHGV-0392650_45	UniRef90_A0A412PKE0	67.0	0.00000000000203	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0392650_45	411470.RUMGNA_02189	102.0	7.76e-26	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0392650_45	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0392650_45	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0392650_45	NF040481	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0392650	Yes	29,035	42	78	1