vOTU vOTU-115331

vOTU: vOTU-115331

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-115331
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp900066535
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00095 → vGENUS-09071 → vOTU-115331
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp900066535
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0114680
Biosample ID	SAMEA4431895
Genome length (bp)	33,918 bps
CheckV completeness	86.48% (Medium-quality)
CDS count	47
CDS density	92.32%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp900066535	Total connections	94	Host agreement	78.72
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Copromonas → Copromonas sp900066535	Total connections	46	Host agreement	82.61

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0114680_1	phrog_19111	52.4	1.9e-21	N/A	unknown function
UniRef90	UHGV-0114680_1	UniRef90_UPI0011582918	554.0	0	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0114680_1	1298920.KI911353_gene4836	115.0	1.42e-25	ATPase involved in DNA repair	N/A
Pfam	UHGV-0114680_1	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0114680_1	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
NCBIFam	UHGV-0114680_2	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0114680_2	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114680_3	742740.HMPREF9474_04291	106.0	7.3e-28	N/A	N/A
COG	UHGV-0114680_5	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
eggNOG-mapper	UHGV-0114680_7	411902.CLOBOL_00122	107.0	1.24e-27	N/A	N/A
PHROG	UHGV-0114680_8	phrog_18725	107.0	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0114680_8	742740.HMPREF9474_03517	197.0	0	N/A	N/A
PHROG	UHGV-0114680_9	phrog_13879	434.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0114680_9	742740.HMPREF9474_03516	1001.0	0	N/A	N/A
structural_annotation	UHGV-0114680_9	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_10	phrog_1194	65.2	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0114680_10	1304866.K413DRAFT_0775	234.0	0	N/A	N/A
structural_annotation	UHGV-0114680_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_11	phrog_1535	441.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0114680_11	UniRef90_A0A174SV65	916.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0114680_11	742740.HMPREF9474_03514	730.0	0	tape measure	N/A
COG	UHGV-0114680_11	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0114680_11	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_12	phrog_8300	88.3	7.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0114680_12	742740.HMPREF9474_03512	111.0	1.23e-30	N/A	N/A
structural_annotation	UHGV-0114680_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_13	phrog_820	130.9	5.9e-39	major tail protein	tail
eggNOG-mapper	UHGV-0114680_13	483218.BACPEC_01149	246.0	0	domain, Protein	N/A
COG	UHGV-0114680_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114680_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_14	phrog_2595	81.9	7e-24	head-tail connector protein	connector
UniRef90	UHGV-0114680_14	UniRef90_UPI001D068DAC	189.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0114680_14	483218.BACPEC_01150	174.0	0	N/A	N/A
Pfam	UHGV-0114680_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0114680_14	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_15	phrog_556	63.8	2.7e-18	minor head protein	head and packaging
eggNOG-mapper	UHGV-0114680_15	742740.HMPREF9474_03509	185.0	0	N/A	N/A
PHROG	UHGV-0114680_16	phrog_8710	136.7	7.00005e-41	N/A	unknown function
eggNOG-mapper	UHGV-0114680_16	742740.HMPREF9474_03508	188.0	0	N/A	N/A
structural_annotation	UHGV-0114680_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_17	phrog_541	87.2	1.6e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0114680_17	742740.HMPREF9474_03507	194.0	0	N/A	N/A
PHROG	UHGV-0114680_18	phrog_15682	71.5	9.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0114680_18	469618.FVAG_01311	78.2	1.23e-17	N/A	N/A
PHROG	UHGV-0114680_19	phrog_212	292.4	0	major head protein	head and packaging
UniRef90	UHGV-0114680_19	UniRef90_UPI001159061E	617.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0114680_19	1151292.QEW_2433	504.0	0	N/A	N/A
structural_annotation	UHGV-0114680_19	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_20	phrog_194	158.5	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0114680_20	UniRef90_UPI00115B9549	362.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0114680_20	1151292.QEW_2434	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0114680_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0114680_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_21	phrog_15041	78.3	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0114680_21	478749.BRYFOR_07608	55.5	0.00000000314	N/A	N/A
structural_annotation	UHGV-0114680_21	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_22	phrog_581	223.7	0	minor head protein	head and packaging
UniRef90	UHGV-0114680_22	UniRef90_A0A1C5VPR8	747.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0114680_22	742740.HMPREF9474_03503	475.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0114680_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0114680_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114680_22	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_23	phrog_25639	132.3	8.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0114680_23	742740.HMPREF9474_03502	107.0	2.54e-29	N/A	N/A
PHROG	UHGV-0114680_24	phrog_533	260.3	0	portal protein	head and packaging
UniRef90	UHGV-0114680_24	UniRef90_UPI00115A2EE2	1016.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0114680_24	1122918.KB907248_gene4503	513.0	0	N/A	N/A
Pfam	UHGV-0114680_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0114680_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0114680_25	K06909	77.9	1.6e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0114680_25	phrog_2	65.1	1.7e-18	terminase large subunit	head and packaging
UniRef90	UHGV-0114680_25	UniRef90_UPI001157E18A	954.0	0	terminase	N/A
eggNOG-mapper	UHGV-0114680_25	1304866.K413DRAFT_0811	670.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0114680_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0114680_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0114680_26	K07474	142.0	7.19987e-42	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0114680_26	phrog_51	154.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0114680_26	UniRef90_UPI001158F972	317.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0114680_26	1304866.K413DRAFT_0812	224.0	0	Terminase small subunit	N/A
Pfam	UHGV-0114680_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0114680_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0114680_26	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_28	phrog_36	50.4	0.000000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0114680_28	UniRef90_A0A3R6PH33	244.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0114680_28	742740.HMPREF9474_03497	164.0	0	N/A	N/A
structural_annotation	UHGV-0114680_28	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_29	phrog_23707	102.2	5.7e-30	N/A	unknown function
UniRef90	UHGV-0114680_29	UniRef90_A0A416Z5W7	152.0	0	Alanine racemase	N/A
eggNOG-mapper	UHGV-0114680_29	411483.FAEPRAA2165_01889	78.6	5.11e-17	N/A	N/A
KOfam	UHGV-0114680_30	K06223	219.4	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0114680_30	phrog_56	185.9	0	DNA methyltransferase	other
UniRef90	UHGV-0114680_30	UniRef90_A0A3A6KEY6	544.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0114680_30	411468.CLOSCI_00302	405.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0114680_30	MTase_II_00030	254.8	0	Type II methyltransferase	RM
Pfam	UHGV-0114680_30	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0114680_30	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0114680_30	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_31	phrog_7566	80.1	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0114680_31	1235800.C819_00511	191.0	0	N/A	N/A
PHROG	UHGV-0114680_34	phrog_15077	86.9	4.1e-25	N/A	unknown function
UniRef90	UHGV-0114680_34	UniRef90_A0A174WLY0	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0114680_34	1280698.AUJS01000007_gene1019	194.0	0	N/A	N/A
structural_annotation	UHGV-0114680_34	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_35	phrog_8470	242.5	0	N/A	unknown function
UniRef90	UHGV-0114680_35	UniRef90_UPI001158FAD9	821.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0114680_35	411902.CLOBOL_05697	518.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0114680_35	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0114680_35	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_36	phrog_4433	51.7	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0114680_36	411902.CLOBOL_05698	137.0	2.06e-38	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0114680_36	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0114680_36	PF12120,NF000066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114680_37	411902.CLOBOL_05699	187.0	0	N/A	N/A
KOfam	UHGV-0114680_38	K03733	175.0	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0114680_38	phrog_1	139.6	3.20001e-41	integrase	integration and excision
UniRef90	UHGV-0114680_38	UniRef90_UPI00115A577A	659.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0114680_38	742740.HMPREF9474_04312	288.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0114680_38	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0114680_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0114680_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0114680_38	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_39	phrog_3584	169.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0114680_39	610130.Closa_0713	279.0	0	N/A	N/A
PHROG	UHGV-0114680_44	phrog_18248	53.0	0.0000000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-0114680_44	UniRef90_UPI00115852EE	129.0	4.81e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0114680_44	1201292.DR75_1541	67.8	0.0000000000000164	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0114680_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0114680_44	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0114680_45	K22300	42.9	0.0000000000097	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0114680_45	phrog_8	64.2	2.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0114680_45	UniRef90_A0A416L2Q1	231.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0114680_45	411460.RUMTOR_02056	134.0	2.13e-38	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0114680_45	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0114680_45	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0114680_45	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0114680_46	phrog_87	92.8	2.7e-27	metallo-protease	other
UniRef90	UHGV-0114680_46	UniRef90_R5G840	268.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0114680_46	411460.RUMTOR_02055	179.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0114680_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0114680_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0114680_46	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114680_47	1123263.AUKY01000072_gene2115	68.6	0.000000000000283	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0114680	Yes	33,918	48	86	1