vOTU vOTU-116471

vOTU: vOTU-116471

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-116471
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00187 → vOTU-116471
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0020227
Biosample ID	N/A
Genome length (bp)	36,846 bps
CheckV completeness	80.98% (Medium-quality)
CDS count	58
CDS density	92.01%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0020227_1	1033743.CAES01000078_gene3736	91.3	1.2e-21	Flagellar Assembly Protein A	N/A
COG	UHGV-0020227_1	COG1315	N/A	N/A	Flagellar assembly protein FapA, interacts with EIIAGlc	N/A
UniRef90	UHGV-0020227_3	UniRef90_A0A8J6J2B4	80.9	1.04e-18	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0020227_3	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0020227_3	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_4	K22300	51.6	0.00000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020227_4	phrog_8	50.3	0.000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020227_4	UniRef90_A0A239ZAB0	84.7	7.04e-19	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0020227_4	1321814.HMPREF9089_00908	75.5	6.18e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0020227_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020227_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0020227_4	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_5	K14059	220.4	0	int; integrase	N/A
PHROG	UHGV-0020227_5	phrog_1	219.5	0	integrase	integration and excision
UniRef90	UHGV-0020227_5	UniRef90_A0A8F2JBJ7	266.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0020227_5	1203606.HMPREF1526_00215	225.0	0	Phage integrase family	N/A
Pfam	UHGV-0020227_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020227_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020227_5	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_6	K01447	101.1	1.5e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0020227_6	phrog_670	110.2	2.4e-32	endolysin	lysis
UniRef90	UHGV-0020227_6	UniRef90_A0A7X9GAJ0	209.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0020227_6	642492.Clole_2825	121.0	1.24e-31	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0020227_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0020227_6	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0020227_6	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020227_7	1284352.AOIG01000022_gene3796	55.1	0.000000018	N/A	N/A
PHROG	UHGV-0020227_9	phrog_1863	71.4	7e-21	N/A	unknown function
UniRef90	UHGV-0020227_9	UniRef90_A0A2K9NYV1	80.1	3.04e-18	Holin	N/A
eggNOG-mapper	UHGV-0020227_9	556261.HMPREF0240_01265	79.0	1.31e-18	N/A	N/A
PHROG	UHGV-0020227_12	phrog_18725	60.1	2.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0020227_12	756499.Desde_2424	75.5	0.00000000000000172	N/A	N/A
PHROG	UHGV-0020227_13	phrog_13879	291.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0020227_13	665956.HMPREF1032_03630	207.0	0	N/A	N/A
structural_annotation	UHGV-0020227_13	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_14	phrog_1194	66.0	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0020227_14	665956.HMPREF1032_03056	66.6	0.00000000000345	N/A	N/A
structural_annotation	UHGV-0020227_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_15	phrog_1535	90.6	1.79997e-41	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0020227_15	1235797.C816_04182	117.0	6.36e-24	SLT domain	N/A
COG	UHGV-0020227_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020227_15	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020227_16	1121333.JMLH01000047_gene1011	83.2	2.01e-18	N/A	N/A
UniRef90	UHGV-0020227_17	UniRef90_UPI00164D364F	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020227_17	1123263.AUKY01000015_gene1618	82.8	4.56e-19	N/A	N/A
Pfam	UHGV-0020227_17	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0020227_17	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_18	phrog_158	57.4	2.6e-16	major tail protein	tail
UniRef90	UHGV-0020227_18	UniRef90_UPI00164D954A	247.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0020227_18	1232453.BAIF02000058_gene1634	100.0	2.22e-25	N/A	N/A
structural_annotation	UHGV-0020227_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020227_19	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020227_20	476272.RUMHYD_01963	80.5	1.03e-16	N/A	N/A
eggNOG-mapper	UHGV-0020227_21	1121866.AUGK01000003_gene1432	86.3	6.13e-20	N/A	N/A
UniRef90	UHGV-0020227_22	UniRef90_UPI00164E20D5	160.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0020227_22	996306.SSUR61_0983	52.0	0.000000387	N/A	N/A
Pfam	UHGV-0020227_22	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0020227_22	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_24	phrog_422	274.6	0	major head protein	head and packaging
UniRef90	UHGV-0020227_24	UniRef90_A0A345MKD0	199.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-0020227_24	645991.Sgly_0340	247.0	0	N/A	N/A
structural_annotation	UHGV-0020227_24	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_26	phrog_64	167.6	0	portal protein	head and packaging
UniRef90	UHGV-0020227_26	UniRef90_A0A3D3Y472	346.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0020227_26	1121866.AUGK01000003_gene1429	292.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0020227_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0020227_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020227_27	COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_28	phrog_38	200.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020227_28	UniRef90_A0A810QA10	700.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0020227_28	1298920.KI911353_gene2682	431.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0020227_28	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0020227_28	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020227_28	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_29	K14060	92.2	6.8e-27	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0020227_29	phrog_125	124.1	9.5e-37	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_29	UniRef90_UPI001A9B5A42	265.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0020227_29	1345695.CLSA_c29990	163.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0020227_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0020227_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020227_29	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020227_30	UniRef90_UPI001C02D1DF	75.1	3.43e-16	winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0020227_30	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0020227_30	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020227_31	UniRef90_A0A174XWS3	75.1	0.000000000000002	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0020227_31	1280676.AUJO01000024_gene3264	62.4	0.000000000663	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0020227_31	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0020227_31	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_32	phrog_6244	45.8	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0020227_32	1354300.AUQY01000005_gene215	108.0	4.93e-30	N/A	N/A
eggNOG-mapper	UHGV-0020227_37	991905.SL003B_3762	57.8	0.00000000119	N/A	N/A
PHROG	UHGV-0020227_38	phrog_606	51.5	0.000000000000013	terminase small subunit	head and packaging
UniRef90	UHGV-0020227_38	UniRef90_UPI001D07B715	132.0	1.29e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0020227_38	1235793.C809_00539	55.1	0.000000777	N/A	N/A
Pfam	UHGV-0020227_38	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0020227_39	phrog_59	139.3	1.10002e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_39	UniRef90_E5DV63	109.0	1.69e-26	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020227_39	749413.E5DV63_9VIRU	109.0	2.83e-27	HNH endonuclease	N/A
PADLOC	UHGV-0020227_39	HEase_00016	75.2	1.6e-21	homing endonuclease	RM
Pfam	UHGV-0020227_39	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0020227_39	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0020227_39	PF07463	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_40	phrog_864	234.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_40	UniRef90_A0A1M7S6C1	236.0	0	Putative DNA primase/helicase	N/A
eggNOG-mapper	UHGV-0020227_40	1235835.C814_02659	226.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0020227_40	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0020227_40	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0020227_40	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0020227_40	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0020227_40	PF05272,PF02257,NF005477,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_41	K02647	42.2	0.0000000000084	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0020227_41	UniRef90_UPI00164DE10C	56.6	0.00000000412	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0020227_41	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0020227_41	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0020227_41	PF13556,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_43	phrog_1829	136.0	2.1e-40	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_43	UniRef90_UPI00164DE9BA	370.0	0	primase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0020227_43	1121866.AUGK01000003_gene1409	211.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0020227_43	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0020227_43	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0020227_43	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_45	K03465	189.3	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0020227_45	phrog_85	132.5	2.9e-39	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_45	UniRef90_UPI001A9AFBB0	310.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0020227_45	690850.Desaf_0003	248.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0020227_45	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0020227_45	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0020227_45	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0020227_45	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_47	K03698	42.5	0.0000000000085	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0020227_47	phrog_28876	104.9	6.3e-31	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0020227_47	UniRef90_A0A1C5MUY3	248.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0020227_47	1219626.HMPREF1639_07345	168.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0020227_47	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0020227_47	PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_48	phrog_229	105.3	5.4e-31	MazG-like pyrophosphatase	other
UniRef90	UHGV-0020227_48	UniRef90_UPI001F4C97BD	143.0	2.03e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020227_48	202752.JL53_00735	102.0	1.13e-24	MazG nucleotide pyrophosphohydrolase domain	N/A
PADLOC	UHGV-0020227_48	HEase_00016	50.4	0.000000000000061	homing endonuclease	RM
Pfam	UHGV-0020227_48	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0020227_48	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0020227_48	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0020227_49	PF08410,COG5515	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_50	phrog_1485	97.7	1.5e-28	N/A	unknown function
UniRef90	UHGV-0020227_50	UniRef90_UPI00164CE11C	160.0	0	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0020227_50	1291050.JAGE01000001_gene471	99.8	4.7e-26	N/A	N/A
Pfam	UHGV-0020227_50	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-0020227_51	PF05037,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_52	phrog_434	71.3	1.3e-20	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_52	UniRef90_UPI00164ECEF5	618.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0020227_52	1121866.AUGK01000003_gene1405	345.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0020227_52	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0020227_52	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0020227_52	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_53	phrog_155	65.1	1.2e-18	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_53	UniRef90_UPI00164E6A42	345.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0020227_53	1415775.U729_2586	91.3	1.58e-19	ERF superfamily	N/A
Pfam	UHGV-0020227_53	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0020227_53	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0020227_54	phrog_1252	423.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_54	UniRef90_UPI00164EA4F0	1083.0	0	DNA polymerase elongation subunit (family B)	N/A
eggNOG-mapper	UHGV-0020227_54	1121866.AUGK01000003_gene1403	429.0	0	DNA replication proofreading	N/A
COG	UHGV-0020227_54	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0020227_54	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-0020227_55	K18959	191.8	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0020227_55	phrog_16	188.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020227_55	UniRef90_UPI00164EB154	705.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0020227_55	1232453.BAIF02000010_gene3343	521.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0020227_55	mREase_IV_00005	52.5	0.0000000000000051	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0020227_55	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0020227_55	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0020227_55	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0020227_55	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020227_56	UniRef90_UPI0018982E6D	157.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0020227_56	1449050.JNLE01000003_gene3909	117.0	1.39e-31	Recombination protein U	N/A
Pfam	UHGV-0020227_56	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0020227_56	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0020227	Yes	36,846	46	81	1