vOTU vOTU-116688

vOTU: vOTU-116688

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-116688
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02273 → vGENUS-02694 → vOTU-116688
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp900770195
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019686
Biosample ID	SAMEA4765986
Genome length (bp)	34,887 bps
CheckV completeness	86.74% (Medium-quality)
CDS count	63
CDS density	92.51%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C → Ruminococcus_C sp900770195	Total connections	17	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019686_3	phrog_478	128.9	1.8e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0019686_3	UniRef90_A0A0U2WUA4	164.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0019686_3	1499683.CCFF01000017_gene2138	185.0	0	N/A	N/A
KOfam	UHGV-0019686_7	K01160	52.5	0.000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0019686_7	phrog_1682	61.9	1.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019686_7	UniRef90_A0A374U439	69.7	0.00000000000578	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0019686_7	1120985.AUMI01000019_gene2247	68.9	0.00000000000034	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0019686_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0019686_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0019686_7	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0019686_8	K07319	119.9	9.5e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0019686_8	phrog_498	458.9	0	DNA methyltransferase	other
UniRef90	UHGV-0019686_8	UniRef90_A0A8A9IDH7	527.0	0	Nucleoid occlusion protein	N/A
eggNOG-mapper	UHGV-0019686_8	226185.EF_2114	513.0	0	DNA methylase	N/A
PADLOC	UHGV-0019686_8	MTase_II_00015	406.0	0	Type II methyltransferase	RM
Pfam	UHGV-0019686_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0019686_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0019686_8	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0019686_8	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_9	phrog_2412	43.0	0.0000000000065	N/A	unknown function
UniRef90	UHGV-0019686_9	UniRef90_UPI001C38E948	74.3	0.0000000000000175	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0019686_9	1203554.HMPREF1476_00247	49.7	0.00000838	N/A	N/A
PHROG	UHGV-0019686_10	phrog_38	166.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019686_10	UniRef90_R9QM30	450.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0019686_10	1140001.I571_01829	462.0	0	N/A	N/A
structural_annotation	UHGV-0019686_10	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_11	phrog_64	164.3	0	portal protein	head and packaging
UniRef90	UHGV-0019686_11	UniRef90_UPI001AA0B7FF	417.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0019686_11	673376.F2VHW1_9CAUD	242.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0019686_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0019686_11	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_12	phrog_2468	101.7	2.3e-30	head morphogenesis	head and packaging
UniRef90	UHGV-0019686_12	UniRef90_A0A3D2MUF2	201.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0019686_12	1504822.CCNO01000013_gene286	153.0	2.08e-39	cell adhesion	N/A
Pfam	UHGV-0019686_12	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0019686_12	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0019686_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019686_12	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_13	phrog_5	59.7	7.5e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019686_13	UniRef90_A0A6A8M6L6	87.0	2.73e-19	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019686_13	1504822.CCNO01000013_gene284	74.7	9.13e-16	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0019686_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0019686_13	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019686_14	UniRef90_A0A6B9SU02	117.0	1.53e-29	Fibronectin autolysin	N/A
structural_annotation	UHGV-0019686_14	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_15	phrog_544	121.3	7.5e-36	major head protein	head and packaging
UniRef90	UHGV-0019686_15	UniRef90_A0A1C6B5R0	326.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0019686_15	476272.RUMHYD_01776	297.0	0	N/A	N/A
structural_annotation	UHGV-0019686_15	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_17	phrog_17977	50.6	0.000000000000028	N/A	unknown function
structural_annotation	UHGV-0019686_17	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019686_18	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_19	phrog_885	68.9	5.6e-20	major tail protein	tail
UniRef90	UHGV-0019686_19	UniRef90_A0A3D3W9F4	83.6	9.02e-16	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019686_19	1504822.CCNO01000012_gene492	156.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0019686_19	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0019686_22	K08757	61.2	1.5e-22	APOA1; apolipoprotein A-I	N/A
PHROG	UHGV-0019686_22	phrog_58	239.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0019686_22	UniRef90_A0A6B9SV28	207.0	0	Putative tape measure protein	N/A
eggNOG-mapper	UHGV-0019686_22	1123309.AQYB01000018_gene819	288.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0019686_22	PF07464	N/A	N/A	Apolipophorin-III precursor (apoLp-III)	ApoLp-III
COG	UHGV-0019686_22	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0019686_23	phrog_33	66.4	6.3e-19	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0019686_23	1540257.JQMW01000004_gene407	57.4	0.000000564	tail component	N/A
COG	UHGV-0019686_23	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0019686_23	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019686_24	1408422.JHYF01000021_gene969	59.3	0.00000186	Prophage endopeptidase tail	N/A
Pfam	UHGV-0019686_24	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
COG	UHGV-0019686_24	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0019686_26	189426.PODO_27405	57.4	0.0000000634	N/A	N/A
KOfam	UHGV-0019686_30	K07273	151.5	7.00649e-45	acm; lysozyme	N/A
PHROG	UHGV-0019686_30	phrog_291	132.1	5.1e-39	endolysin	lysis
UniRef90	UHGV-0019686_30	UniRef90_UPI001D002A5A	142.0	6.38e-37	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0019686_30	1235793.C809_03470	135.0	5.44e-33	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0019686_30	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0019686_30	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0019686_30	PF01183,PF08460,MF_00496,NF033202,NF009621,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019686_31	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0019686_32	K23779	54.2	0.0000000000000037	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0019686_32	phrog_5823	43.8	0.0000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019686_32	UniRef90_A0A1Y4GVS8	78.2	2.03e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019686_32	1408321.JNJD01000010_gene1463	67.4	0.000000000000843	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0019686_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019686_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019686_32	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019686_34	COG4451	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_35	phrog_3754	79.7	3.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0019686_35	476272.RUMHYD_01764	145.0	1.97583e-43	N/A	N/A
PHROG	UHGV-0019686_36	phrog_21718	88.0	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0019686_36	397290.C810_05210	69.7	0.000000000000587	N/A	N/A
PHROG	UHGV-0019686_37	phrog_22984	62.1	8.9e-18	N/A	unknown function
PHROG	UHGV-0019686_38	phrog_16490	144.5	3.09687e-43	N/A	unknown function
eggNOG-mapper	UHGV-0019686_38	397290.C810_01328	67.4	0.000000000421	N/A	N/A
PHROG	UHGV-0019686_39	phrog_20016	91.0	8.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0019686_39	397290.C810_05214	69.7	0.00000000000027	N/A	N/A
structural_annotation	UHGV-0019686_39	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019686_40	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019686_42	1410622.JNKY01000017_gene632	78.2	0.00000000000000493	N/A	N/A
Pfam	UHGV-0019686_42	PF16729	N/A	N/A	N/A	DUF5067
KOfam	UHGV-0019686_43	K14059	209.2	0	int; integrase	N/A
PHROG	UHGV-0019686_43	phrog_1	189.1	0	integrase	integration and excision
UniRef90	UHGV-0019686_43	UniRef90_A0A7X9GK55	285.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0019686_43	86416.Clopa_1675	130.0	1.3e-31	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019686_43	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0019686_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019686_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019686_43	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_44	phrog_8	60.7	3.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019686_44	UniRef90_A0A3C0SLK7	68.6	0.000000000000631	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019686_44	350688.Clos_1048	68.6	0.000000000000165	Transcriptional	N/A
Pfam	UHGV-0019686_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019686_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019686_47	PF10743	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_51	phrog_253	75.2	9.7e-22	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019686_51	UniRef90_A0A285PT93	85.1	4.13e-18	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0019686_51	1410670.JHXF01000015_gene2268	68.6	0.00000000000172	Siphovirus Gp157	N/A
Pfam	UHGV-0019686_51	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0019686_51	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_52	phrog_2872	231.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019686_52	UniRef90_A0A7X9XQ75	290.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0019686_52	536233.CLO_1541	281.0	0	AAA domain	N/A
Pfam	UHGV-0019686_52	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0019686_52	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_53	phrog_18107	169.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0019686_53	397290.C810_05167	151.0	2.74654e-43	N/A	N/A
structural_annotation	UHGV-0019686_53	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0019686_54	phrog_15768	134.8	4.9e-40	N/A	unknown function
UniRef90	UHGV-0019686_54	UniRef90_UPI00195DFC15	130.0	6.19e-34	N/A	N/A
eggNOG-mapper	UHGV-0019686_54	642492.Clole_0798	98.6	5.17e-22	N/A	N/A
AcrCatalog	UHGV-0019686_54	cluster_38323	99.8	1.98e-27	NA	N/A
Pfam	UHGV-0019686_54	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0019686_54	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0019686_54	PF19808	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019686	Yes	34,887	37	87	1