vOTU vOTU-116820

vOTU: vOTU-116820

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-116820
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00041 → vSUBFAM-00234 → vOTU-116820
Host lineage
Host range breadth
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0043858
Biosample ID	N/A
Genome length (bp)	34,545 bps
CheckV completeness	76.07% (Medium-quality)
CDS count	38
CDS density	89.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0043858_1	phrog_1558	140.1	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0043858_1	UniRef90_UPI00112044DB	105.0	6.34e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_1	1211817.CCAT010000007_gene1046	102.0	1.78e-25	N/A	N/A
structural_annotation	UHGV-0043858_1	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_3	K07451	40.1	0.000000000067	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0043858_3	phrog_119	65.3	9.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043858_3	UniRef90_A0A1I3QJN8	201.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0043858_3	1415774.U728_1257	118.0	3.84e-33	HNH nucleases	N/A
Pfam	UHGV-0043858_3	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0043858_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0043858_4	86416.Clopa_0336	61.2	0.0000000000112	N/A	N/A
PHROG	UHGV-0043858_5	phrog_9	324.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0043858_5	UniRef90_UPI0007103B58	1073.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0043858_5	1211817.CCAT010000053_gene2129	772.0	0	Phage Terminase	N/A
Pfam	UHGV-0043858_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0043858_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0043858_5	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0043858_5	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_7	phrog_12	116.4	2.1e-34	portal protein	head and packaging
UniRef90	UHGV-0043858_7	UniRef90_A0A1I3QGY1	591.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0043858_7	349161.Dred_2606	248.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0043858_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0043858_7	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0043858_7	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0043858_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_8	K01358	146.9	1.90577e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0043858_8	phrog_94	215.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0043858_8	UniRef90_A0A1C5YER3	223.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0043858_8	1232452.BAIB02000007_gene1626	178.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0043858_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0043858_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0043858_8	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_9	phrog_10	90.7	1.4e-26	major head protein	head and packaging
UniRef90	UHGV-0043858_9	UniRef90_UPI0005E156C9	508.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0043858_9	1415774.U728_1252	310.0	0	Phage capsid family	N/A
Pfam	UHGV-0043858_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0043858_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0043858_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0043858_9	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_10	phrog_749	64.2	1.7e-18	N/A	unknown function
UniRef90	UHGV-0043858_10	UniRef90_A0A1I3QJG6	177.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0043858_10	1450694.BTS2_0540	66.6	0.000000000000441	N/A	N/A
PHROG	UHGV-0043858_11	phrog_5635	67.9	1.6e-19	head-tail adaptor	connector
UniRef90	UHGV-0043858_11	UniRef90_A0A1I3QJF5	194.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-0043858_11	1220589.CD32_01710	66.2	0.00000000000228	N/A	N/A
NCBIFam	UHGV-0043858_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0043858_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043858_12	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_13	phrog_5509	105.9	2.6e-31	neck protein	connector
eggNOG-mapper	UHGV-0043858_13	1123315.AUIP01000014_gene1956	54.3	0.0000002	N/A	N/A
structural_annotation	UHGV-0043858_13	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043858_14	UniRef90_A0A316S919	177.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0043858_14	1384484.AEQU_1175	167.0	0	N/A	N/A
structural_annotation	UHGV-0043858_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_16	phrog_23464	257.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0043858_16	33035.JPJF01000023_gene3232	148.0	8.08e-35	phage tail tape measure protein	N/A
COG	UHGV-0043858_16	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0043858_16	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_17	phrog_202	82.1	4.90454e-44	distal tail protein Dit	tail
UniRef90	UHGV-0043858_17	UniRef90_A0A1I3QJ72	790.0	0	Putative phage tail component, N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_17	1499684.CCNP01000020_gene2277	136.0	9e-31	Phage tail protein	N/A
Pfam	UHGV-0043858_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
Pfam	UHGV-0043858_17	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0043858_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0043858_17	PF05709,PF18342,TIGR01633,NF040670,COG4722,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043858_18	UniRef90_UPI0005DD4852	1000.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_18	66692.ABC0924	75.5	0.000000000139	Phage minor structural protein	N/A
Pfam	UHGV-0043858_18	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0043858_18	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0043858_18	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0043858_18	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0043858_18	PF14594,PF08239,PF05382,TIGR01665,NF041850,NF033742,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_19	phrog_25191	112.9	2.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0043858_19	411901.BACCAC_00720	214.0	0	chlorophyll binding	N/A
COG	UHGV-0043858_19	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
KOfam	UHGV-0043858_21	K19721	50.4	0.0000000000000082	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0043858_21	phrog_6320	60.1	4.1e-17	tail fiber protein	tail
UniRef90	UHGV-0043858_21	UniRef90_L1Q8H4	274.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_21	545697.HMPREF0216_02867	274.0	0	domain, Protein	N/A
Pfam	UHGV-0043858_21	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0043858_21	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
NCBIFam	UHGV-0043858_21	NF040910.1	N/A	N/A	CD1375 family protein	N/A
COG	UHGV-0043858_21	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0043858_23	phrog_1193	58.2	1.2e-16	hemolysin	other
UniRef90	UHGV-0043858_23	UniRef90_UPI0018AB0AA6	92.0	6.57e-23	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0043858_23	318464.IO99_03750	76.6	1.36e-17	Haemolysin XhlA	N/A
Pfam	UHGV-0043858_23	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0043858_24	phrog_1129	77.7	9.7e-23	holin	lysis
UniRef90	UHGV-0043858_24	UniRef90_UPI0005E8A3FA	141.0	2.7003e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-0043858_24	702450.CUW_2556	119.0	3.36e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0043858_24	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0043858_24	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_25	K01447	91.3	1.5e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0043858_25	phrog_1493	73.9	3.1e-21	endolysin	lysis
UniRef90	UHGV-0043858_25	UniRef90_UPI001E28D1E5	357.0	0	amidase	N/A
eggNOG-mapper	UHGV-0043858_25	445973.CLOBAR_02328	310.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0043858_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0043858_25	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0043858_25	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0043858_28	phrog_2329	68.6	6.5e-20	N/A	unknown function
UniRef90	UHGV-0043858_28	UniRef90_UPI0018AB79C1	67.0	0.000000000000177	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_28	469617.FUAG_02549	53.9	0.00000000461	N/A	N/A
structural_annotation	UHGV-0043858_28	MF_01193,NF007312,COG2336	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_32	K18640	95.2	9.7e-28	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0043858_32	phrog_691	118.4	6.1e-35	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043858_32	UniRef90_UPI000C07CEB3	262.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-0043858_32	1414720.CBYM010000017_gene3096	208.0	0	Heat shock 70 kDa protein	N/A
Pfam	UHGV-0043858_32	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
COG	UHGV-0043858_32	COG0443	N/A	N/A	Molecular chaperone DnaK (HSP70)	N/A
structural_annotation	UHGV-0043858_32	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_33	phrog_6493	105.3	3.7e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043858_33	UniRef90_UPI001C111768	145.0	2.01e-37	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0043858_33	1121422.AUMW01000049_gene1257	144.0	1.49e-37	Transcriptional regulator	N/A
COG	UHGV-0043858_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0043858_33	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_34	K18830	63.2	6e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0043858_34	phrog_8	83.4	4e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043858_34	UniRef90_UPI000F0599D2	84.0	9.48e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_34	340099.Teth39_0032	60.1	0.000000000152	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0043858_34	retron_type_VI_hth_cluster2_1	55.1	0.0000000000000023	N/A	Retron
Pfam	UHGV-0043858_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043858_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0043858_34	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0043858_35	K18830	66.5	4.6e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0043858_35	phrog_2967	55.9	8.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043858_35	UniRef90_A0A644VK06	138.0	6.07e-40	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0043858_35	431943.CKL_4031	103.0	7.02e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0043858_35	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0043858_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0043858_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_37	phrog_3584	260.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043858_37	UniRef90_A0A4P8IFK4	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043858_37	1321814.HMPREF9089_00921	243.0	0	N/A	N/A
structural_annotation	UHGV-0043858_37	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0043858_38	phrog_1974	282.2	0	N/A	unknown function
UniRef90	UHGV-0043858_38	UniRef90_UPI000B831A5F	290.0	0	nucleoid-associated protein	N/A
eggNOG-mapper	UHGV-0043858_38	1476973.JMMB01000007_gene2805	270.0	0	N/A	N/A
Pfam	UHGV-0043858_38	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-0043858_38	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
structural_annotation	UHGV-0043858_38	PF04245,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0043858	Yes	34,545	29	76	1