vOTU vOTU-117080

vOTU: vOTU-117080

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-117080
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00026 → vGENUS-13073 → vOTU-117080
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1397528
Biosample ID	N/A
Genome length (bp)	29,624 bps
CheckV completeness	52.13% (Medium-quality)
CDS count	43
CDS density	92.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	2109	Host agreement	94.12
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	8	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1397528_1	K06400	283.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1397528_1	phrog_95	287.0	0	integrase	integration and excision
UniRef90	UHGV-1397528_1	UniRef90_UPI001D084942	713.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1397528_1	1384065.JAGS01000001_gene1134	259.0	0	N/A	N/A
Pfam	UHGV-1397528_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1397528_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1397528_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1397528_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397528_3	UniRef90_UPI001D05EDA5	82.4	2.66e-19	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-1397528_3	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1397528_3	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_6	phrog_9804	150.7	7.00649e-45	N/A	unknown function
UniRef90	UHGV-1397528_6	UniRef90_A0A292SPH8	317.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1397528_6	626523.GCWU000342_01038	132.0	1.07e-35	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1397528_6	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1397528_6	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_7	phrog_2514	112.3	2.9e-33	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397528_7	UniRef90_A0A2P1JTY8	115.0	4.29e-27	DNA replication protein	N/A
eggNOG-mapper	UHGV-1397528_7	1111134.HMPREF1253_0393	118.0	2.17e-29	Transcriptional regulator	N/A
COG	UHGV-1397528_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1397528_7	PF09681,MF_01177,TIGR01714,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_9	K00571	163.3	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1397528_9	phrog_67	127.9	7.8e-39	DNA methyltransferase	other
UniRef90	UHGV-1397528_9	UniRef90_A0A7C5MNF0	149.0	2.93e-40	Methyltransferase	N/A
eggNOG-mapper	UHGV-1397528_9	694427.Palpr_0287	134.0	1.7e-35	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1397528_9	MTase_II_00157	152.9	2.8026e-45	Type II methyltransferase	RM
Pfam	UHGV-1397528_9	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1397528_9	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1397528_9	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_12	phrog_19106	188.0	0	N/A	unknown function
UniRef90	UHGV-1397528_12	UniRef90_A0A412RQV5	266.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1397528_12	658655.HMPREF0988_00875	144.0	7.09057e-42	N/A	N/A
PHROG	UHGV-1397528_13	phrog_424	114.8	2.8e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1397528_13	UniRef90_A0A412RQR2	420.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1397528_13	1280696.ATVY01000096_gene1971	250.0	0	N/A	N/A
Pfam	UHGV-1397528_13	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1397528_13	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1397528_13	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_14	K03111	111.2	1.5e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1397528_14	phrog_44	123.0	2.5e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397528_14	UniRef90_UPI001C0FB836	159.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1397528_14	622312.ROSEINA2194_04345	152.0	1.4013e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1397528_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1397528_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1397528_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1397528_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1397528_14	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_16	phrog_2715	136.4	1.2e-40	N/A	unknown function
UniRef90	UHGV-1397528_16	UniRef90_A0A1B8RSY6	103.0	5.99e-25	N/A	N/A
eggNOG-mapper	UHGV-1397528_16	171693.BN988_01626	107.0	1.67e-27	N/A	N/A
structural_annotation	UHGV-1397528_16	PF18406	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_17	K06167	46.4	0.00000000000044	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1397528_17	phrog_392	180.1	0	metal-dependent hydrolase	other
UniRef90	UHGV-1397528_17	UniRef90_A0A412RQX2	342.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1397528_17	1122985.HMPREF1991_02241	143.0	2.36e-39	N/A	N/A
Pfam	UHGV-1397528_17	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1397528_17	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1397528_17	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1397528_17	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_19	phrog_25456	42.4	1.5e-16	N/A	unknown function
PHROG	UHGV-1397528_20	phrog_2185	297.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397528_20	UniRef90_UPI001BC46C39	489.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1397528_20	658655.HMPREF0988_00886	375.0	0	N/A	N/A
Pfam	UHGV-1397528_20	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1397528_20	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_22	K19171	104.1	1.2e-30	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1397528_22	phrog_77	194.5	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1397528_22	UniRef90_A0A8D9PGW5	1109.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-1397528_22	1298920.KI911353_gene2731	293.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1397528_22	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1397528_22	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1397528_22	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_24	phrog_26861	124.1	7e-37	N/A	unknown function
UniRef90	UHGV-1397528_24	UniRef90_A0A8D9PGK1	231.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1397528_24	511680.BUTYVIB_01841	226.0	0	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1397528_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1397528_24	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1397528_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1397528_24	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
COG	UHGV-1397528_27	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1397528_27	PF10552	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_28	phrog_463	211.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-1397528_28	UniRef90_A0A8D9PGL6	345.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-1397528_28	596329.HMPREF0631_1352	182.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-1397528_28	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1397528_28	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1397528_28	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1397528_28	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397528_29	UniRef90_UPI001D0090A6	137.0	7.94004e-41	N/A	N/A
eggNOG-mapper	UHGV-1397528_29	411470.RUMGNA_03231	98.6	2.54e-26	N/A	N/A
Pfam	UHGV-1397528_29	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1397528_29	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1397528_29	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_30	K22300	47.9	0.00000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1397528_30	phrog_2967	49.5	0.000000000000073	transcriptional regulator	transcription regulation
UniRef90	UHGV-1397528_30	UniRef90_UPI001D029144	191.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1397528_30	457412.RSAG_00795	118.0	2.72e-32	sequence-specific DNA binding	N/A
COG	UHGV-1397528_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1397528_30	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1397528_31	K07273	129.8	2.7e-38	acm; lysozyme	N/A
PHROG	UHGV-1397528_31	phrog_291	96.3	4e-28	endolysin	lysis
UniRef90	UHGV-1397528_31	UniRef90_A0A7U9R8E5	200.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1397528_31	1235800.C819_00458	205.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1397528_31	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1397528_31	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1397528_31	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_33	phrog_6616	147.8	6.5861e-44	tail protein	tail
UniRef90	UHGV-1397528_33	UniRef90_A0A8D9PGP3	1029.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1397528_33	1294142.CINTURNW_1706	289.0	0	Phage minor structural protein	N/A
COG	UHGV-1397528_33	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1397528_33	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397528_34	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_35	phrog_1194	66.5	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1397528_35	1232453.BAIF02000058_gene1638	66.2	0.00000000000271	N/A	N/A
structural_annotation	UHGV-1397528_35	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1397528_38	phrog_130	101.7	8.3e-30	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1397528_38	UniRef90_A0A8D9PG17	389.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-1397528_38	658655.HMPREF0988_00912	241.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1397528_38	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1397528_38	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1397528_38	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1397528_38	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1397528_39	PF07875	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397528_40	UniRef90_UPI00174DD543	59.3	0.000000000221	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-1397528_40	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1397528_42	UniRef90_A0A8D9UIV6	205.0	0	RNAse domain protein	N/A
PHROG	UHGV-1397528_43	phrog_28918	153.4	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1397528_43	1298920.KI911353_gene2649	254.0	0	tape measure	N/A
COG	UHGV-1397528_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1397528	Yes	29,624	36	52	1