vOTU vOTU-117512

vOTU: vOTU-117512

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-117512
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Sellimonas → Sellimonas intestinalis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01615 → vGENUS-06666 → vOTU-117512
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Sellimonas → Sellimonas intestinalis
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0068520
Biosample ID	SAMEA2580130
Genome length (bp)	30,707 bps
CheckV completeness	81.50% (Medium-quality)
CDS count	55
CDS density	92.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	14	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Sellimonas → Sellimonas intestinalis	Total connections	18	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0068520_1	phrog_643	55.2	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0068520_1	UniRef90_A0A8E3SKS6	91.3	6.25e-22	N/A	N/A
Pfam	UHGV-0068520_1	PF11195	N/A	N/A	N/A	DUF2829
PHROG	UHGV-0068520_2	phrog_750	101.2	6.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0068520_2	478749.BRYFOR_08527	70.9	0.0000000000000219	N/A	N/A
structural_annotation	UHGV-0068520_2	PF13835,NF040858	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068520_7	PF18822	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_10	phrog_3584	168.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0068520_10	1232452.BAIB02000007_gene1647	598.0	0	N/A	N/A
structural_annotation	UHGV-0068520_10	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_11	phrog_824	142.5	1.10002e-42	N/A	unknown function
UniRef90	UHGV-0068520_11	UniRef90_A0A1Y3WFH5	254.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0068520_11	1232452.BAIB02000007_gene1645	313.0	0	VRR_NUC	N/A
Pfam	UHGV-0068520_11	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0068520_13	phrog_15077	150.3	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0068520_13	1232452.BAIB02000007_gene1643	560.0	0	N/A	N/A
structural_annotation	UHGV-0068520_13	PF02195,PF07506,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0068520_14	700015.Corgl_0970	47.8	0.00000708	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0068520_14	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
PHROG	UHGV-0068520_15	phrog_29911	73.8	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0068520_15	97139.C824_00748	88.6	3.99e-20	N/A	N/A
KOfam	UHGV-0068520_16	K00571	94.4	1.5e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0068520_16	phrog_23224	199.3	0	DNA methyltransferase	other
UniRef90	UHGV-0068520_16	UniRef90_A0A3E3JY83	501.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0068520_16	665950.HMPREF1025_02545	358.0	0	DNA methylase	N/A
PADLOC	UHGV-0068520_16	MTase_II_00172	71.4	3.9e-22	Type II methyltransferase	RM
Pfam	UHGV-0068520_16	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0068520_16	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0068520_16	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068520_17	UniRef90_A0A8G1TFU2	81.3	5.53e-17	N/A	N/A
PHROG	UHGV-0068520_18	phrog_15198	45.3	0.000000000000018	N/A	unknown function
UniRef90	UHGV-0068520_18	UniRef90_UPI001915CC67	70.9	0.000000000000133	N/A	N/A
eggNOG-mapper	UHGV-0068520_18	665950.HMPREF1025_02540	51.2	0.0000033	N/A	N/A
Pfam	UHGV-0068520_18	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0068520_21	phrog_36	43.2	0.0000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0068520_21	UniRef90_UPI00189836E6	273.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0068520_21	1232452.BAIB02000007_gene1634	258.0	0	N/A	N/A
structural_annotation	UHGV-0068520_21	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_23	phrog_1758	97.9	7.7e-29	acetyltransferase	other
UniRef90	UHGV-0068520_23	UniRef90_A0A239X206	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-0068520_23	1336234.JAGN01000004_gene506	216.0	0	acetyltransferase	N/A
COG	UHGV-0068520_23	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0068520_23	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
KOfam	UHGV-0068520_24	K06223	220.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0068520_24	phrog_56	200.5	0	DNA methyltransferase	other
UniRef90	UHGV-0068520_24	UniRef90_A0A828SZY9	454.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0068520_24	1232452.BAIB02000007_gene1633	477.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0068520_24	MTase_II_00039	156.6	0	Type II methyltransferase	RM
Pfam	UHGV-0068520_24	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0068520_24	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0068520_24	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068520_26	UniRef90_A0A3A6K7U9	57.0	0.00000000206	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0068520_26	1232452.BAIB02000007_gene1632	124.0	4.42e-37	N/A	N/A
structural_annotation	UHGV-0068520_26	NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0068520_27	K07451	51.1	0.000000000000028	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0068520_27	phrog_119	80.9	1.7e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068520_27	UniRef90_A0A3E3JY08	177.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0068520_27	1232452.BAIB02000007_gene1631	173.0	0	HNH nucleases	N/A
Pfam	UHGV-0068520_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0068520_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0068520_28	phrog_5110	98.6	3.8e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0068520_28	UniRef90_A0A1C5LZF0	122.0	1.14e-33	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0068520_28	349161.Dred_2608	84.3	6.9e-20	N/A	N/A
Pfam	UHGV-0068520_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0068520_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_29	phrog_9	262.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0068520_29	UniRef90_A0A3E3JY25	1135.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0068520_29	1232452.BAIB02000007_gene1629	769.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0068520_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0068520_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0068520_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0068520_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_30	phrog_12	80.3	1.9e-23	portal protein	head and packaging
UniRef90	UHGV-0068520_30	UniRef90_A0A3E3JY21	759.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0068520_30	1232452.BAIB02000007_gene1627	698.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0068520_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0068520_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0068520_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0068520_31	K01358	160.3	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0068520_31	phrog_94	232.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0068520_31	UniRef90_A0A3E3JYT5	447.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0068520_31	1232452.BAIB02000007_gene1626	443.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0068520_31	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0068520_31	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0068520_31	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_32	phrog_10	67.3	1.5e-19	major head protein	head and packaging
UniRef90	UHGV-0068520_32	UniRef90_A0A3E3JY53	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0068520_32	1232452.BAIB02000007_gene1625	731.0	0	Phage capsid family	N/A
Pfam	UHGV-0068520_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0068520_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0068520_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0068520_32	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_33	phrog_31690	41.7	0.000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0068520_33	1232452.BAIB02000007_gene1624	233.0	0	N/A	N/A
UniRef90	UHGV-0068520_35	UniRef90_A0A844KCF4	136.0	2.76e-39	Phage head closure protein	N/A
structural_annotation	UHGV-0068520_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_36	phrog_78	50.9	0.000000000000031	tail terminator	connector
structural_annotation	UHGV-0068520_36	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_37	phrog_5	45.1	0.0000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0068520_37	UniRef90_D4M595	113.0	2.55e-30	Phage protein, HK97 gp10 family	N/A
PHROG	UHGV-0068520_38	phrog_88	85.8	5.5e-25	major tail protein	tail
UniRef90	UHGV-0068520_38	UniRef90_A0A3E3JYD8	390.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0068520_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0068520_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068520_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_41	phrog_23464	235.5	0	N/A	unknown function
UniRef90	UHGV-0068520_41	UniRef90_A0A7G5N113	232.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0068520_41	1232452.BAIB02000007_gene1616	946.0	0	phage tail tape measure protein	N/A
COG	UHGV-0068520_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0068520_42	phrog_33	52.4	0.00000000000001	distal tail protein Dit	tail
UniRef90	UHGV-0068520_42	UniRef90_A0A844KEE5	227.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0068520_42	1232452.BAIB02000007_gene1615	471.0	0	phage tail	N/A
NCBIFam	UHGV-0068520_42	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0068520_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0068520_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_43	phrog_13289	335.5	0	tail protein	tail
UniRef90	UHGV-0068520_43	UniRef90_A0A3E3JY67	1130.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0068520_43	1232452.BAIB02000007_gene1614	1123.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0068520_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0068520_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0068520_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0068520_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_44	phrog_14030	139.3	1.6e-41	N/A	unknown function
UniRef90	UHGV-0068520_44	UniRef90_A0A3E3JYD3	656.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0068520_44	1232452.BAIB02000007_gene1613	655.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0068520_44	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0068520_44	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0068520_44	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0068520_44	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_45	phrog_819	44.3	0.0000000000014	tail protein	tail
UniRef90	UHGV-0068520_45	UniRef90_UPI000D7A7A43	437.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0068520_45	290402.Cbei_3387	63.2	0.00000000789	N/A	N/A
Pfam	UHGV-0068520_45	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0068520_46	phrog_19695	74.0	3.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0068520_46	1232452.BAIB02000007_gene1611	223.0	0	N/A	N/A
structural_annotation	UHGV-0068520_46	PF19714	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068520_47	UniRef90_UPI001A9BB450	70.5	0.00000000015	collagen-like protein	N/A
eggNOG-mapper	UHGV-0068520_47	1232452.BAIB02000007_gene1610	493.0	0	N/A	N/A
KOfam	UHGV-0068520_48	K16628	70.6	6.4e-21	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0068520_48	phrog_819	136.0	2.8e-40	tail protein	tail
UniRef90	UHGV-0068520_48	UniRef90_UPI00196B7043	131.0	1.04e-36	collagen-like protein	N/A
eggNOG-mapper	UHGV-0068520_48	1232452.BAIB02000007_gene1609	169.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0068520_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0068520_48	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
KOfam	UHGV-0068520_49	K16628	95.7	1.6e-28	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0068520_49	phrog_819	94.8	9.2e-29	tail protein	tail
UniRef90	UHGV-0068520_49	UniRef90_UPI0006B14F6F	201.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0068520_49	1232452.BAIB02000007_gene1608	189.0	0	Collagen triple helix repeat	N/A
Pfam	UHGV-0068520_49	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0068520_49	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-0068520_51	1232452.BAIB02000007_gene1607	246.0	0	N/A	N/A
NCBIFam	UHGV-0068520_52	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0068520_52	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0068520_53	phrog_1863	57.5	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0068520_53	1232452.BAIB02000007_gene1606	226.0	0	N/A	N/A
PHROG	UHGV-0068520_54	phrog_18218	104.0	8.8e-31	N/A	unknown function
UniRef90	UHGV-0068520_54	UniRef90_A0A3E3K396	226.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0068520_54	1232452.BAIB02000007_gene1605	228.0	0	N/A	N/A
structural_annotation	UHGV-0068520_54	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0068520_55	K01447	41.2	0.000000000031	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0068520_55	phrog_1794	44.2	0.0000000000033	amidase	lysis
UniRef90	UHGV-0068520_55	UniRef90_UPI0015EBC107	153.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0068520_55	1232452.BAIB02000007_gene1604	201.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0068520_55	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0068520_55	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0068520	Yes	30,707	43	82	1