vOTU vOTU-117773

vOTU: vOTU-117773

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-117773
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00070 → vSUBFAM-00249 → vGENUS-00211 → vOTU-117773
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1545617
Biosample ID	SAMN02334126
Genome length (bp)	43,050 bps
CheckV completeness	60.61% (Medium-quality)
CDS count	57
CDS density	93.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	56	Host agreement	96.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp900544945	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1545617_1	K14059	123.6	2.7e-36	int; integrase	N/A
PHROG	UHGV-1545617_1	phrog_1	123.5	2e-36	integrase	integration and excision
UniRef90	UHGV-1545617_1	UniRef90_A0A3D2G173	288.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_1	1226322.HMPREF1545_00144	89.7	3.2e-17	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1545617_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1545617_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1545617_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1545617_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1545617_2	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545617_4	742740.HMPREF9474_03483	55.8	0.0000000243	N/A	N/A
structural_annotation	UHGV-1545617_4	PF13601,TIGR04176,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545617_5	445974.CLORAM_00010	57.0	0.0000000734	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1545617_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1545617_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1545617_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_6	phrog_8	50.9	0.000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-1545617_6	UniRef90_UPI00195B2DBA	55.8	0.0000000215	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1545617_6	411460.RUMTOR_02056	58.2	0.000000000947	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1545617_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1545617_6	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1545617_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_7	K07741	129.9	4e-38	antB; anti-repressor protein	N/A
PHROG	UHGV-1545617_7	phrog_130	260.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1545617_7	UniRef90_A0A1X2FY70	340.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_7	1321778.HMPREF1982_02476	310.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1545617_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1545617_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1545617_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1545617_7	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
Pfam	UHGV-1545617_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1545617_9	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_11	K08309	40.3	0.000000000032	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1545617_11	phrog_19890	97.5	1.1e-28	N/A	unknown function
UniRef90	UHGV-1545617_11	UniRef90_A0A6I2R0Q9	182.0	0	Transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_11	411468.CLOSCI_01470	101.0	6.67e-23	Transglycosylase SLT domain	N/A
Pfam	UHGV-1545617_11	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1545617_11	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1545617_11	PF19489,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_12	phrog_434	147.7	8.12753e-44	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545617_12	UniRef90_UPI001898139F	200.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1545617_12	1121441.AUCX01000014_gene536	182.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1545617_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1545617_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1545617_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1545617_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_13	PF17764	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_14	phrog_674	156.0	0	N/A	unknown function
UniRef90	UHGV-1545617_14	UniRef90_UPI000428A750	122.0	4.09e-29	N/A	N/A
eggNOG-mapper	UHGV-1545617_14	1121441.AUCX01000014_gene537	122.0	6.86e-30	N/A	N/A
Pfam	UHGV-1545617_14	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1545617_14	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_15	K07455	146.1	3.50325e-43	recT; recombination protein RecT	N/A
PHROG	UHGV-1545617_15	phrog_148	141.4	5.09933e-42	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545617_15	UniRef90_UPI0012DD5B14	150.0	1.97e-39	recombinase RecT	N/A
eggNOG-mapper	UHGV-1545617_15	1211844.CBLM010000016_gene1512	142.0	8.21e-37	RecT family	N/A
Pfam	UHGV-1545617_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1545617_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1545617_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1545617_15	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
Pfam	UHGV-1545617_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
structural_annotation	UHGV-1545617_16	PF00436,MF_00984,TIGR00621,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_18	phrog_8489	250.8	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545617_18	UniRef90_UPI001D099DE7	319.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1545617_18	1391647.AVSV01000022_gene2531	238.0	0	DnaD domain protein	N/A
COG	UHGV-1545617_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1545617_18	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_19	phrog_9804	162.3	0	N/A	unknown function
UniRef90	UHGV-1545617_19	UniRef90_A0A853JK79	174.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_19	1121344.JHZO01000003_gene981	190.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1545617_19	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1545617_19	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_21	phrog_190	88.9	5.2e-26	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1545617_21	UniRef90_UPI0019595FE2	108.0	8.87e-27	N/A	N/A
eggNOG-mapper	UHGV-1545617_21	1226322.HMPREF1545_00295	109.0	7.86e-28	N/A	N/A
Pfam	UHGV-1545617_21	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1545617_21	PF06356,NF033179	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_23	K00558	133.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1545617_23	phrog_116	151.3	0	DNA methyltransferase	other
UniRef90	UHGV-1545617_23	UniRef90_A0A1C5KYC3	383.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1545617_23	718252.FP2_16350	310.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1545617_23	oMTase_00004	145.8	0	orphan methyltransferase	RM
Pfam	UHGV-1545617_23	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1545617_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1545617_24	phrog_924	42.6	0.000000000011	N/A	unknown function
UniRef90	UHGV-1545617_24	UniRef90_A0A2V2EEG3	138.0	4.91e-39	N/A	N/A
Pfam	UHGV-1545617_24	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1545617_25	phrog_38832	64.8	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1545617_25	665956.HMPREF1032_03087	58.5	0.0000000446	N/A	N/A
structural_annotation	UHGV-1545617_25	PF07073	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_27	K02647	67.5	1.8e-19	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1545617_27	UniRef90_K1SN71	56.2	0.00000000431	HTH_30 domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_27	877424.ATWC01000048_gene915	52.4	0.000000435	PucR C-terminal helix-turn-helix domain	N/A
Pfam	UHGV-1545617_27	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1545617_27	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1545617_27	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_28	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_30	K22299	47.4	0.00000000000042	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1545617_30	phrog_8	52.4	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1545617_30	UniRef90_UPI00195A6681	63.9	0.00000000000871	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_30	1121085.AUCI01000010_gene502	60.5	0.000000000111	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1545617_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1545617_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1545617_30	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545617_32	1308863.U5J9B2_9CAUD	101.0	9.76e-20	N/A	N/A
structural_annotation	UHGV-1545617_32	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_34	phrog_2739	49.7	3.4e-26	portal protein	head and packaging
structural_annotation	UHGV-1545617_34	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_35	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_36	phrog_3313	42.2	0.00000000000038	N/A	unknown function
structural_annotation	UHGV-1545617_36	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_38	phrog_4088	57.3	2e-16	N/A	unknown function
structural_annotation	UHGV-1545617_38	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_40	phrog_1129	69.9	2.6e-20	holin	lysis
UniRef90	UHGV-1545617_40	UniRef90_A0A6A8VHY5	127.0	2.08e-36	Enolase	N/A
eggNOG-mapper	UHGV-1545617_40	1226322.HMPREF1545_00069	117.0	2.32e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1545617_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1545617_40	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_42	K08640	93.8	1.7e-27	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1545617_42	phrog_18955	154.4	0	N/A	unknown function
UniRef90	UHGV-1545617_42	UniRef90_UPI001C035E39	596.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1545617_42	1235797.C816_04171	330.0	0	Peptidase M15	N/A
Pfam	UHGV-1545617_42	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1545617_42	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1545617_42	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_42	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_43	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1545617_44	568816.Acin_1323	49.3	0.00000192	N/A	N/A
PHROG	UHGV-1545617_45	phrog_10993	46.3	0.000000000000038	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1545617_45	UniRef90_A0A252F2M2	231.0	0	N/A	N/A
Pfam	UHGV-1545617_45	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1545617_45	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_48	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_49	phrog_16444	62.9	1.3e-18	N/A	unknown function
UniRef90	UHGV-1545617_49	UniRef90_A0A3M8AU08	68.9	0.00000000457	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1545617_49	387093.SUN_0956	60.5	0.000000773	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-1545617_49	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1545617_49	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_49	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1545617_52	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-1545617_53	phrog_937	59.0	8.7e-17	hemolysin	other
UniRef90	UHGV-1545617_53	UniRef90_R5GGW2	56.6	0.000000029	Phosphoglucosamine mutase	N/A
eggNOG-mapper	UHGV-1545617_53	693746.OBV_19000	69.3	0.000000000000044	N/A	N/A
structural_annotation	UHGV-1545617_55	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1545617_57	K03529	41.0	0.000000000011	smc; chromosome segregation protein	N/A
PHROG	UHGV-1545617_57	phrog_4211	249.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1545617_57	UniRef90_A0A2V2CTR2	371.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1545617_57	1235802.C823_04585	182.0	9.52883e-44	Phage-related minor tail protein	N/A
Pfam	UHGV-1545617_57	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1545617_57	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1545617_57	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1545617_57	PF10145,TIGR01760	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1545617	Yes	43,050	57	61	1