vOTU vOTU-118741

vOTU: vOTU-118741

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-118741
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00469 → vGENUS-11724 → vOTU-118741
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0115271
Biosample ID	N/A
Genome length (bp)	38,782 bps
CheckV completeness	87.52% (Medium-quality)
CDS count	46
CDS density	94.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella	Total connections	187	Host agreement	99.47
PHIST-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella → Parasutterella excrementihominis	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0115271_1	phrog_4912	242.2	0	tail fiber assembly	tail
UniRef90	UHGV-0115271_1	UniRef90_UPI001F4F2EB0	470.0	0	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0115271_1	762966.HMPREF9439_01057	149.0	7.54039e-42	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0115271_1	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0115271_1	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_2	phrog_5073	58.5	4.9e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-0115271_2	563192.HMPREF0179_03429	57.4	0.00000117	domain, Protein	N/A
Pfam	UHGV-0115271_2	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0115271_2	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
KOfam	UHGV-0115271_3	K06823	40.8	0.00000000001	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-0115271_3	phrog_366	47.1	0.00000000000032	tail fiber protein	tail
Pfam	UHGV-0115271_3	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0115271_3	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_4	phrog_684	566.7	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0115271_4	521000.PROVRETT_05519	339.0	0	N/A	N/A
PHROG	UHGV-0115271_5	phrog_9880	220.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0115271_5	557598.LHK_01554	169.0	3.54e-39	purine ribonucleoside salvage	N/A
Pfam	UHGV-0115271_5	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
Pfam	UHGV-0115271_5	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-0115271_5	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0115271_5	PF18763,PF18814	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_6	phrog_873	111.4	7.8e-33	endolysin	head and packaging
eggNOG-mapper	UHGV-0115271_6	1380394.JADL01000008_gene3752	99.8	1.7e-21	N/A	N/A
structural_annotation	UHGV-0115271_6	MF_04122	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_7	phrog_418	48.1	0.00000000000018	internal virion protein	head and packaging
UniRef90	UHGV-0115271_7	UniRef90_A0A6F8VD79	82.8	8.94e-16	N/A	N/A
eggNOG-mapper	UHGV-0115271_7	557598.LHK_01551	73.6	0.000000000000493	N/A	N/A
structural_annotation	UHGV-0115271_7	PF07321,COG5034	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_8	phrog_376	440.3	0	tail protein	tail
UniRef90	UHGV-0115271_8	UniRef90_A0A6F8VDG3	609.0	0	N/A	N/A
eggNOG-mapper	UHGV-0115271_8	557598.LHK_01546	716.0	0	N/A	N/A
structural_annotation	UHGV-0115271_8	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_9	phrog_394	122.4	3e-36	tail protein	tail
eggNOG-mapper	UHGV-0115271_9	557598.LHK_01545	121.0	1.01e-31	N/A	N/A
structural_annotation	UHGV-0115271_9	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_10	phrog_427	53.6	0.0000000000000036	N/A	unknown function
Pfam	UHGV-0115271_10	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-0115271_10	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_11	phrog_212	48.2	6.8e-26	major head protein	head and packaging
UniRef90	UHGV-0115271_11	UniRef90_A0A660PTT1	117.0	1.71e-26	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0115271_11	1344012.ATMI01000052_gene1935	112.0	1.02e-25	N/A	N/A
Pfam	UHGV-0115271_11	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0115271_11	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_12	phrog_458	134.9	6.89999e-40	protease	other
UniRef90	UHGV-0115271_12	UniRef90_UPI0013EFD20D	114.0	1.07e-27	protease	N/A
eggNOG-mapper	UHGV-0115271_12	1003200.AXXA_27995	90.5	2.78e-19	N/A	N/A
PHROG	UHGV-0115271_13	phrog_528	44.4	0.0000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0115271_13	585.DR95_530	48.9	0.00000542	N/A	N/A
PHROG	UHGV-0115271_14	phrog_332	453.4	0	head-tail adaptor	connector
UniRef90	UHGV-0115271_14	UniRef90_UPI0012BC467D	1085.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0115271_14	557598.LHK_01539	431.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0115271_14	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0115271_14	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115271_16	UniRef90_UPI0012BC2332	285.0	0	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0115271_16	1072685.IX83_07115	90.5	4.05e-21	Acetyltransferase (GNAT) family	N/A
Pfam	UHGV-0115271_16	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0115271_16	COG3375	N/A	N/A	Predicted acetyltransferase, GNAT superfamily	N/A
KOfam	UHGV-0115271_17	K06909	50.9	0.000000000000023	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0115271_17	phrog_5902	247.4	0	N/A	unknown function
UniRef90	UHGV-0115271_17	UniRef90_UPI0012BCF9F6	1018.0	0	terminase	N/A
eggNOG-mapper	UHGV-0115271_17	457398.HMPREF0326_03019	439.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0115271_17	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0115271_17	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0115271_18	K07474	80.9	3.7e-23	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0115271_18	phrog_51	91.5	9.4e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0115271_18	UniRef90_UPI00065A905B	82.8	7.68e-17	terminase small subunit	N/A
eggNOG-mapper	UHGV-0115271_18	1293597.BN147_08365	62.0	0.0000000012	Terminase small subunit	N/A
Pfam	UHGV-0115271_18	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0115271_18	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0115271_18	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115271_19	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_20	phrog_244	72.6	7.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0115271_20	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115271_21	762966.HMPREF9439_01020	134.0	3.8e-39	N/A	N/A
KOfam	UHGV-0115271_22	K02315	190.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0115271_22	phrog_50	192.5	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115271_22	UniRef90_A0A5B3FNB0	494.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-0115271_22	762966.HMPREF9439_01018	315.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0115271_22	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0115271_22	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0115271_22	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_23	phrog_1032	68.9	1e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115271_23	UniRef90_A0A5B3FNM4	523.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0115271_23	762966.HMPREF9439_01017	152.0	3.74007e-41	N/A	N/A
Pfam	UHGV-0115271_23	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0115271_23	PF07106,MF_01177,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0115271_24	K01356	52.3	0.000000000000014	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0115271_24	phrog_4	83.4	4e-24	transcriptional repressor	transcription regulation
UniRef90	UHGV-0115271_24	UniRef90_UPI001563F13C	351.0	0	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0115271_24	469610.HMPREF0189_01170	295.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0115271_24	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0115271_24	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0115271_24	PF00717,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_25	phrog_5018	46.5	0.00000000000049	N/A	unknown function
UniRef90	UHGV-0115271_25	UniRef90_UPI0012BB7DC3	600.0	0	group I intron-associated PD-(D/E)XK endonuclease	N/A
Pfam	UHGV-0115271_25	PF11645	N/A	N/A	PD-(D/E)XK endonuclease	PDDEXK_5
UniRef90	UHGV-0115271_28	UniRef90_UPI0013F5A8D0	100.0	3.17e-25	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0115271_28	347834.RHE_CH02926	58.2	0.00000000273	N/A	N/A
Pfam	UHGV-0115271_28	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0115271_28	PF19239	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115271_30	UniRef90_A0A3D3SJ30	124.0	5.04e-35	Transcriptional regulator	N/A
PHROG	UHGV-0115271_33	phrog_155	113.0	2.7e-33	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115271_33	UniRef90_A0A6J5P0M3	87.0	3.16e-17	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0115271_33	1207076.ALAT01000105_gene1941	81.6	2.7e-16	ERF superfamily	N/A
Pfam	UHGV-0115271_33	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0115271_33	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-0115271_34	K03111	150.2	2.10195e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0115271_34	phrog_44	128.6	4.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115271_34	UniRef90_F3QNN6	149.0	2.70451e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0115271_34	469610.HMPREF0189_01394	149.0	4.48416e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0115271_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0115271_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0115271_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0115271_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0115271_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_35	phrog_253	102.1	5.6e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115271_35	UniRef90_A7B3R2	61.2	0.00000000787	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0115271_35	742823.HMPREF9465_00905	85.1	1.08e-18	Siphovirus Gp157	N/A
Pfam	UHGV-0115271_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0115271_35	PF05565,NF002139	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115271_38	469610.HMPREF0189_01154	50.1	0.00000767	N/A	N/A
eggNOG-mapper	UHGV-0115271_39	762966.HMPREF9439_00995	82.8	4.2e-20	N/A	N/A
UniRef90	UHGV-0115271_42	UniRef90_F3QJA9	402.0	0	Toxin-antitoxin system, toxin component, Fic family	N/A
eggNOG-mapper	UHGV-0115271_42	762966.HMPREF9439_01010	402.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-0115271_42	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-0115271_42	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115271_42	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_44	phrog_2245	57.2	3.2e-16	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-0115271_45	K07733	55.9	0.0000000000000011	alpA; prophage regulatory protein	N/A
UniRef90	UHGV-0115271_45	UniRef90_D9Y6B9	147.0	4.2039e-45	Transcriptional regulator, AlpA family	N/A
eggNOG-mapper	UHGV-0115271_45	743974.MBO_05697	49.3	0.000000653	Transcriptional regulator	N/A
Pfam	UHGV-0115271_45	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-0115271_45	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0115271_45	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0115271_46	phrog_1	73.7	3e-21	integrase	integration and excision
UniRef90	UHGV-0115271_46	UniRef90_D9Y6B8	875.0	0	Arm-DNA-bind_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0115271_46	469610.HMPREF0189_01073	875.0	0	DNA integration	N/A
Pfam	UHGV-0115271_46	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
COG	UHGV-0115271_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0115271_46	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0115271	Yes	38,782	48	88	1