vOTU vOTU-118761

vOTU: vOTU-118761

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-118761
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00017 → vSUBFAM-00014 → vOTU-118761
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0001003
Biosample ID	SAMEA4766164
Genome length (bp)	54,142 bps
CheckV completeness	88.88% (Medium-quality)
CDS count	73
CDS density	92.03%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	8	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0001003_1	phrog_881	72.7	3e-21	holin	lysis
UniRef90	UHGV-0001003_1	UniRef90_A0A4Q7P349	106.0	6.74e-29	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0001003_1	742740.HMPREF9474_02251	107.0	8.63e-30	Putative phage holin Dp-1	N/A
Pfam	UHGV-0001003_1	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0001003_1	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_2	phrog_4105	89.2	3.2e-26	N/A	unknown function
UniRef90	UHGV-0001003_2	UniRef90_A0A7M4BNX2	115.0	4.06e-31	Phage holin	N/A
eggNOG-mapper	UHGV-0001003_2	742733.HMPREF9469_05011	141.0	2.54055e-42	N/A	N/A
KOfam	UHGV-0001003_3	K07273	137.5	1.3e-40	acm; lysozyme	N/A
PHROG	UHGV-0001003_3	phrog_291	110.6	1.9e-32	endolysin	lysis
UniRef90	UHGV-0001003_3	UniRef90_UPI00195E5E78	169.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0001003_3	1304880.JAGB01000002_gene2202	154.0	2.8096e-42	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-0001003_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0001003_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0001003_3	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001003_4	PF11514	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001003_7	657322.FPR_23450	176.0	0	N/A	N/A
PHROG	UHGV-0001003_8	phrog_4912	71.6	1.6e-20	tail fiber assembly	tail
UniRef90	UHGV-0001003_8	UniRef90_UPI0012E0BB7D	88.2	6.09e-20	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0001003_8	1577887.JSYG01000017_gene1981	72.4	0.0000000000000173	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0001003_8	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0001003_8	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0001003_9	K00986	65.8	6e-19	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0001003_9	phrog_1423	135.4	4.6e-40	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001003_9	UniRef90_UPI0012B5656A	207.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0001003_9	411468.CLOSCI_01505	157.0	1.63994e-41	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-0001003_9	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0001003_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0001003_9	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_10	phrog_17147	100.2	9.4e-30	N/A	unknown function
UniRef90	UHGV-0001003_10	UniRef90_UPI00156EC4BD	134.0	5.3e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-0001003_10	411470.RUMGNA_00248	137.0	1e-31	Phage tail-collar fibre protein	N/A
COG	UHGV-0001003_10	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0001003_11	phrog_19280	57.4	1.9e-16	N/A	unknown function
PHROG	UHGV-0001003_12	phrog_1067	373.8	0	minor head protein	head and packaging
UniRef90	UHGV-0001003_12	UniRef90_A0A413DNC1	438.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0001003_12	1160721.RBI_I01574	342.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0001003_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0001003_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0001003_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0001003_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_13	phrog_33	57.2	4.7e-16	distal tail protein Dit	tail
UniRef90	UHGV-0001003_13	UniRef90_A0A173Z1X4	186.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0001003_13	1123315.AUIP01000014_gene1961	74.3	0.000000000000331	tail component	N/A
COG	UHGV-0001003_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0001003_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_14	phrog_4372	468.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0001003_14	UniRef90_UPI001C26BAEC	562.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0001003_14	478749.BRYFOR_08513	471.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0001003_14	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-0001003_14	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0001003_14	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001003_15	UniRef90_A0A373NV95	153.0	1.4013e-45	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0001003_15	428125.CLOLEP_01421	146.0	1.09301e-43	N/A	N/A
structural_annotation	UHGV-0001003_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_16	phrog_4338	224.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0001003_16	742740.HMPREF9474_02265	165.0	0	N/A	N/A
PHROG	UHGV-0001003_17	phrog_4282	141.5	3.80032e-42	N/A	unknown function
eggNOG-mapper	UHGV-0001003_17	742733.HMPREF9469_05024	101.0	7.95e-26	N/A	N/A
PHROG	UHGV-0001003_18	phrog_2645	316.2	0	major tail protein	tail
UniRef90	UHGV-0001003_18	UniRef90_A0A2U8UI58	253.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0001003_18	428125.CLOLEP_01415	241.0	0	N/A	N/A
structural_annotation	UHGV-0001003_18	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001003_19	UniRef90_D4P7D8	97.1	4.36e-24	Structural protein	N/A
eggNOG-mapper	UHGV-0001003_19	742733.HMPREF9469_05027	115.0	6.61e-32	N/A	N/A
structural_annotation	UHGV-0001003_19	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_20	phrog_4270	112.1	2.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0001003_20	428125.CLOLEP_01413	122.0	5.82e-35	N/A	N/A
structural_annotation	UHGV-0001003_20	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
KOfam	UHGV-0001003_21	K06904	54.5	0.0000000000000017	N/A	N/A
PHROG	UHGV-0001003_21	phrog_3270	680.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0001003_21	UniRef90_A0A2V2EP61	564.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0001003_21	691965.D4P7D6_9CAUD	449.0	0	peptidase activity	N/A
structural_annotation	UHGV-0001003_21	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_22	phrog_12	91.5	6.9e-27	portal protein	head and packaging
UniRef90	UHGV-0001003_22	UniRef90_A0A7X5CG68	513.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0001003_22	742733.HMPREF9469_05032	512.0	0	Phage portal protein	N/A
Pfam	UHGV-0001003_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-0001003_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_23	phrog_9	234.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0001003_23	UniRef90_UPI001D05F004	972.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0001003_23	742733.HMPREF9469_05033	962.0	0	Phage Terminase	N/A
Pfam	UHGV-0001003_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0001003_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0001003_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0001003_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0001003_24	UniRef90_A0A090ISP6	80.5	7.41e-16	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0001003_24	35841.BT1A1_0854	80.5	1.24e-16	N/A	N/A
PHROG	UHGV-0001003_25	phrog_32444	48.0	9.6e-20	N/A	unknown function
structural_annotation	UHGV-0001003_26	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_27	phrog_19468	59.8	5.5e-17	N/A	unknown function
UniRef90	UHGV-0001003_27	UniRef90_UPI001379BA63	109.0	1.07e-27	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001003_27	1298920.KI911353_gene4854	87.0	8.13e-18	Phage minor capsid protein 2	N/A
Pfam	UHGV-0001003_27	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0001003_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001003_27	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_28	phrog_4247	118.8	2e-35	virion structural protein	head and packaging
UniRef90	UHGV-0001003_28	UniRef90_D4P7C3	100.0	5.07e-25	Structural protein	N/A
eggNOG-mapper	UHGV-0001003_28	691965.D4P7C3_9CAUD	100.0	8.51e-26	N/A	N/A
PHROG	UHGV-0001003_29	phrog_4321	189.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0001003_29	411460.RUMTOR_01352	177.0	0	N/A	N/A
PHROG	UHGV-0001003_30	phrog_4259	127.8	3.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0001003_30	742740.HMPREF9474_02276	109.0	6.34e-30	N/A	N/A
PHROG	UHGV-0001003_31	phrog_4303	111.8	2.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-0001003_31	411460.RUMTOR_01355	81.3	7.06e-19	N/A	N/A
PHROG	UHGV-0001003_32	phrog_4291	1212.9	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001003_32	UniRef90_A0A3A9IVX2	1046.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0001003_32	742740.HMPREF9474_02278	1024.0	0	N/A	N/A
Pfam	UHGV-0001003_32	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-0001003_32	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0001003_32	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0001003_32	PF05183	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_33	phrog_3953	184.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001003_33	UniRef90_UPI001D06A0CE	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-0001003_33	742740.HMPREF9474_02279	256.0	0	N/A	N/A
Pfam	UHGV-0001003_33	PF10926	N/A	N/A	N/A	DUF2800
structural_annotation	UHGV-0001003_33	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001003_34	PF09297	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_39	phrog_6721	316.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0001003_39	742740.HMPREF9474_02288	273.0	0	N/A	N/A
structural_annotation	UHGV-0001003_39	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_40	phrog_2152	117.0	6.1e-35	N/A	unknown function
UniRef90	UHGV-0001003_40	UniRef90_UPI00164B9367	147.0	1.28e-39	N/A	N/A
eggNOG-mapper	UHGV-0001003_40	428125.CLOLEP_01358	150.0	1.08993e-41	N/A	N/A
Pfam	UHGV-0001003_40	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0001003_40	PF19880	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001003_41	PF18300,NF033216,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_43	phrog_19852	76.8	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0001003_43	742740.HMPREF9474_02297	56.6	0.000000000237	N/A	N/A
PHROG	UHGV-0001003_47	phrog_62	133.8	1.1e-39	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001003_47	UniRef90_A0A4Q7P307	545.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0001003_47	742740.HMPREF9474_02299	558.0	0	Helicase conserved C-terminal domain	N/A
COG	UHGV-0001003_47	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0001003_47	PF02399,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_49	phrog_4787	83.6	1.8e-24	single strand annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0001003_49	428125.CLOLEP_01377	104.0	2.97e-26	N/A	N/A
structural_annotation	UHGV-0001003_49	PF21265,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_51	phrog_4210	1843.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0001003_51	UniRef90_A0A372V5Y1	1672.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0001003_51	742733.HMPREF9469_05066	1610.0	0	N/A	N/A
Pfam	UHGV-0001003_51	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-0001003_51	PF00136,PF05272,PF10991,PF09250,MF_04100,MF_00016,NF011296,TIGR00592,COG3378,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_53	phrog_4678	170.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0001003_53	742740.HMPREF9474_02306	178.0	0	N/A	N/A
PHROG	UHGV-0001003_54	phrog_4695	59.7	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0001003_54	428125.CLOLEP_01371	78.6	0.00000000000000166	N/A	N/A
PHROG	UHGV-0001003_55	phrog_14968	74.3	8.9e-22	N/A	unknown function
UniRef90	UHGV-0001003_55	UniRef90_UPI001D07EB08	59.7	0.0000000000849	histidine kinase	N/A
eggNOG-mapper	UHGV-0001003_55	742740.HMPREF9474_02308	58.5	0.0000000000399	N/A	N/A
PHROG	UHGV-0001003_56	phrog_2152	223.1	0	N/A	unknown function
UniRef90	UHGV-0001003_56	UniRef90_UPI00157010A4	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0001003_56	742733.HMPREF9469_05074	186.0	0	N/A	N/A
Pfam	UHGV-0001003_56	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0001003_56	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_58	phrog_4079	169.5	0	N/A	unknown function
UniRef90	UHGV-0001003_58	UniRef90_D4P7H8	100.0	9.36e-23	Gp067	N/A
eggNOG-mapper	UHGV-0001003_58	691965.D4P7H8_9CAUD	100.0	1.57e-23	N/A	N/A
structural_annotation	UHGV-0001003_59	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_61	phrog_2152	189.3	0	N/A	unknown function
UniRef90	UHGV-0001003_61	UniRef90_UPI001D065195	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0001003_61	428125.CLOLEP_01362	177.0	0	N/A	N/A
Pfam	UHGV-0001003_61	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0001003_61	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0001003_65	phrog_17256	187.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0001003_65	428125.CLOLEP_01353	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0001003_66	633697.EubceDRAFT1_1471	63.2	0.0000000161	N/A	N/A
Pfam	UHGV-0001003_66	PF20234	N/A	N/A	N/A	DUF6591
PHROG	UHGV-0001003_68	phrog_15309	53.2	0.0000000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0001003_68	665956.HMPREF1032_00626	50.4	0.000000261	N/A	N/A
PHROG	UHGV-0001003_71	phrog_11237	152.2	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0001003_71	411460.RUMTOR_02009	147.0	6.86636e-44	N/A	N/A
PHROG	UHGV-0001003_72	phrog_6058	84.9	4.5e-25	N/A	unknown function
UniRef90	UHGV-0001003_72	UniRef90_A0A2V1JQ38	130.0	6.63e-38	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0001003_72	411460.RUMTOR_02008	127.0	2.62e-37	N/A	N/A
KOfam	UHGV-0001003_73	K14059	85.3	1e-24	int; integrase	N/A
PHROG	UHGV-0001003_73	phrog_1	126.9	2e-37	integrase	integration and excision
UniRef90	UHGV-0001003_73	UniRef90_UPI001C38D717	456.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0001003_73	742733.HMPREF9469_05096	426.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0001003_73	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0001003_73	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0001003_73	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0001003_73	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0001003	Yes	54,142	50	89	1