vOTU vOTU-119285

vOTU: vOTU-119285

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-119285
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00391 → vOTU-119285
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1381156
Biosample ID	SAMEA3449224
Genome length (bp)	23,635 bps
CheckV completeness	55.41% (Medium-quality)
CDS count	42
CDS density	91.62%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	54	Host agreement	94.44
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1381156_1	K06236	67.9	6.5e-20	COL1A; collagen type I alpha	N/A
PHROG	UHGV-1381156_1	phrog_5073	90.9	1.6e-26	tail fiber protein	tail
UniRef90	UHGV-1381156_1	UniRef90_A0A8D9PDI4	583.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-1381156_1	1203606.HMPREF1526_02029	65.1	0.0000000446	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1381156_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1381156_1	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-1381156_1	PF10651,NF033814,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_2	phrog_15239	85.9	2.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1381156_2	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-1381156_3	phrog_1357	257.9	0	major head protein	head and packaging
UniRef90	UHGV-1381156_3	UniRef90_A0A8D9UH64	793.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1381156_3	1449126.JQKL01000003_gene1695	449.0	0	N/A	N/A
Pfam	UHGV-1381156_3	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1381156_3	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1381156_3	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_4	phrog_13908	309.3	0	N/A	unknown function
UniRef90	UHGV-1381156_4	UniRef90_A0A844DRV7	119.0	9.87e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1381156_4	1410650.JHWL01000003_gene2831	121.0	1.98e-29	N/A	N/A
UniRef90	UHGV-1381156_5	UniRef90_A0A8D9PDR6	187.0	0	YsxB-like protein	N/A
Pfam	UHGV-1381156_5	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1381156_5	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_6	phrog_156	326.2	0	portal protein	head and packaging
UniRef90	UHGV-1381156_6	UniRef90_A0A8D9UH10	1235.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1381156_6	748224.HMPREF9436_01396	537.0	0	N/A	N/A
structural_annotation	UHGV-1381156_6	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_7	K06909	117.8	1.1e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1381156_7	phrog_979	196.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1381156_7	UniRef90_A0A8D9PDR5	1015.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1381156_7	657322.FPR_02290	618.0	0	Terminase-like family	N/A
Pfam	UHGV-1381156_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1381156_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1381156_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381156_8	UniRef90_A0A8D9PDT2	248.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1381156_8	1226322.HMPREF1545_00042	139.0	1.19e-40	N/A	N/A
structural_annotation	UHGV-1381156_8	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_9	K22299	47.5	0.00000000000043	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1381156_9	phrog_8	64.7	1.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1381156_9	UniRef90_A0A8D9PDC4	151.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-1381156_9	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1381156_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1381156_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1381156_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381156_11	UniRef90_A0A8D9PDK2	96.7	2.44e-24	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-1381156_13	UniRef90_A0A8D9PDK2	52.4	0.000000861	Zinc-ribbon containing domain	N/A
structural_annotation	UHGV-1381156_17	PF09947,NF006816,COG4830	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_20	K00390	59.8	8.3e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1381156_20	phrog_424	128.2	5.9e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1381156_20	UniRef90_A0A1H7KWC5	317.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-1381156_20	665956.HMPREF1032_00140	279.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1381156_20	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1381156_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1381156_20	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_21	K00571	123.9	1.8e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1381156_21	phrog_67	103.2	9.2e-31	DNA methyltransferase	other
UniRef90	UHGV-1381156_21	UniRef90_A0A2U1CFM2	418.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1381156_21	658655.HMPREF0988_00878	368.0	0	DNA methylase	N/A
PADLOC	UHGV-1381156_21	MTase_II_00157	89.1	8e-26	Type II methyltransferase	RM
Pfam	UHGV-1381156_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1381156_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1381156_21	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_22	phrog_190	109.2	3.2e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381156_22	UniRef90_A0A8D9PDD6	276.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1381156_22	1226322.HMPREF1545_00295	118.0	9.74e-32	N/A	N/A
Pfam	UHGV-1381156_22	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1381156_22	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_24	phrog_9804	70.2	3.1e-20	N/A	unknown function
UniRef90	UHGV-1381156_24	UniRef90_A0A8D9PDS1	263.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1381156_24	903814.ELI_3550	85.5	5.91e-19	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1381156_24	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1381156_24	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_25	phrog_15768	98.4	3.6e-29	N/A	unknown function
UniRef90	UHGV-1381156_25	UniRef90_A0A8D9PDU3	115.0	1.15e-28	N/A	N/A
eggNOG-mapper	UHGV-1381156_25	445970.ALIPUT_02689	78.2	0.0000000000000111	DNA-binding transcription factor activity	N/A
AcrCatalog	UHGV-1381156_25	cluster_38323	79.7	5.42e-20	NA	N/A
Pfam	UHGV-1381156_25	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1381156_25	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1381156_25	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_27	K03111	147.0	1.79366e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1381156_27	phrog_44	140.9	7.49975e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381156_27	UniRef90_R6GTK3	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1381156_27	1007096.BAGW01000007_gene1922	191.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1381156_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1381156_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1381156_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1381156_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1381156_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_28	phrog_7566	90.5	1.1e-26	N/A	unknown function
UniRef90	UHGV-1381156_28	UniRef90_A0A8D9UHC0	130.0	6.08e-38	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1381156_28	693746.OBV_24070	110.0	3.18e-30	N/A	N/A
PHROG	UHGV-1381156_30	phrog_1389	80.1	2.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1381156_30	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-1381156_30	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_31	phrog_7838	142.7	2.40042e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381156_31	UniRef90_A0A8D9UGW3	424.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1381156_31	742767.HMPREF9456_02052	187.0	0	N/A	N/A
structural_annotation	UHGV-1381156_31	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_32	phrog_253	85.4	7.5e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381156_32	UniRef90_A0A8D9PDS3	318.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-1381156_32	748224.HMPREF9436_03356	106.0	6.52e-27	Siphovirus Gp157	N/A
Pfam	UHGV-1381156_32	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1381156_32	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381156_34	UniRef90_A0A8D9UH91	317.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1381156_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1381156_34	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_36	phrog_22529	53.4	0.000000000000003	N/A	unknown function
UniRef90	UHGV-1381156_36	UniRef90_A0A8D9UHA1	298.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-1381156_36	658088.HMPREF0987_02675	63.5	0.00000000133	peptidase	N/A
Pfam	UHGV-1381156_36	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1381156_36	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1381156_36	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381156_38	UniRef90_A0A8D9PDM8	135.0	2.28e-40	Pyocin activator protein	N/A
UniRef90	UHGV-1381156_39	UniRef90_A0A8D9PDN2	130.0	2.21e-38	DNA-binding protein	N/A
structural_annotation	UHGV-1381156_39	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1381156_40	phrog_8	45.2	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1381156_40	UniRef90_A0A8D9UHB1	141.0	2.5896e-42	Repressor protein CI	N/A
eggNOG-mapper	UHGV-1381156_40	1297617.JPJD01000059_gene2644	56.2	0.0000000062	addiction module antidote protein HigA	N/A
Pfam	UHGV-1381156_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1381156_40	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1381156_40	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381156_41	UniRef90_A0A8D9UHA6	380.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1381156_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1381156_41	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1381156_41	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1381156_42	K14059	149.3	3.92364e-44	int; integrase	N/A
PHROG	UHGV-1381156_42	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-1381156_42	UniRef90_A0A8D9UGU2	729.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1381156_42	693746.OBV_41260	284.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1381156_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1381156_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1381156_42	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1381156	Yes	23,635	57	55	1