vOTU vOTU-119463

vOTU: vOTU-119463

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-119463
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vOTU-119463
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0002437
Biosample ID	SAMEA4766401
Genome length (bp)	33,798 bps
CheckV completeness	88.90% (Medium-quality)
CDS count	50
CDS density	95.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	1031	Host agreement	89.04
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	121	Host agreement	90.08

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002437_3	phrog_2566	45.8	0.00000000000093	N/A	unknown function
PHROG	UHGV-0002437_4	phrog_6616	168.7	0	tail protein	tail
UniRef90	UHGV-0002437_4	UniRef90_A0A8D9PGP3	775.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0002437_4	1499683.CCFF01000014_gene3896	271.0	0	Phage minor structural protein	N/A
COG	UHGV-0002437_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0002437_4	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_5	phrog_1401	65.3	9.1e-19	N/A	unknown function
UniRef90	UHGV-0002437_5	UniRef90_UPI00129D2DCF	67.8	0.00000000000699	N/A	N/A
eggNOG-mapper	UHGV-0002437_5	1294142.CINTURNW_1705	58.5	0.00000000426	N/A	N/A
structural_annotation	UHGV-0002437_5	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_6	phrog_1194	69.8	3.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0002437_6	33035.JPJF01000093_gene2242	148.0	9.80909e-45	N/A	N/A
structural_annotation	UHGV-0002437_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_7	phrog_1535	278.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0002437_7	UniRef90_R6TDK7	355.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0002437_7	33035.JPJF01000093_gene2243	357.0	0	phage tail tape measure protein	N/A
COG	UHGV-0002437_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0002437_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_8	phrog_8355	100.9	3.2e-30	N/A	unknown function
UniRef90	UHGV-0002437_8	UniRef90_UPI0006BBA9AA	139.0	5.70001e-40	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0002437_8	394503.Ccel_3036	114.0	8.41e-31	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0002437_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0002437_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_9	phrog_8300	66.6	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0002437_9	1151292.QEW_2425	58.9	0.000000000866	N/A	N/A
structural_annotation	UHGV-0002437_9	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_10	phrog_820	112.9	2e-33	major tail protein	tail
UniRef90	UHGV-0002437_10	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0002437_10	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-0002437_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_11	phrog_2595	89.3	3.5e-26	head-tail connector protein	connector
UniRef90	UHGV-0002437_11	UniRef90_UPI001D068DAC	143.0	1.35996e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0002437_11	742740.HMPREF9474_03510	131.0	1.17e-37	N/A	N/A
Pfam	UHGV-0002437_11	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0002437_11	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_12	phrog_556	54.8	0.0000000000000014	minor head protein	head and packaging
eggNOG-mapper	UHGV-0002437_12	483218.BACPEC_01151	143.0	3.15993e-42	N/A	N/A
PHROG	UHGV-0002437_13	phrog_8710	125.6	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0002437_13	742740.HMPREF9474_03508	123.0	4.07e-35	N/A	N/A
structural_annotation	UHGV-0002437_13	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_14	phrog_541	67.3	2.4e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0002437_14	1304866.K413DRAFT_0783	145.0	1.58347e-43	N/A	N/A
PHROG	UHGV-0002437_16	phrog_422	211.1	0	major head protein	head and packaging
UniRef90	UHGV-0002437_16	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0002437_16	1121947.AUHK01000002_gene935	217.0	0	N/A	N/A
structural_annotation	UHGV-0002437_16	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_17	phrog_2303	132.8	2.6e-39	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0002437_17	1304866.K413DRAFT_0806	139.0	4.71e-38	N/A	N/A
PHROG	UHGV-0002437_18	phrog_872	81.2	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0002437_18	397290.C810_05225	124.0	3.88e-35	N/A	N/A
dbAPIS	UHGV-0002437_18	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_19	phrog_581	240.8	0	minor head protein	head and packaging
UniRef90	UHGV-0002437_19	UniRef90_A0A1C5VPR8	978.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0002437_19	33035.JPJF01000093_gene2255	441.0	0	N/A	N/A
Pfam	UHGV-0002437_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0002437_19	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0002437_19	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0002437_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_20	phrog_533	275.0	0	portal protein	head and packaging
UniRef90	UHGV-0002437_20	UniRef90_A0A3D5LTG9	964.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0002437_20	33035.JPJF01000093_gene2257	573.0	0	N/A	N/A
structural_annotation	UHGV-0002437_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_21	K06909	102.8	4.3e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002437_21	phrog_2	75.5	1.1e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0002437_21	UniRef90_A0A413YU24	923.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0002437_21	1294142.CINTURNW_1023	524.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0002437_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0002437_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002437_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_22	K07474	167.2	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0002437_22	phrog_51	171.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0002437_22	UniRef90_A0A413YU49	329.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0002437_22	1499683.CCFF01000014_gene3916	158.0	0	Terminase small subunit	N/A
Pfam	UHGV-0002437_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0002437_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0002437_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_24	phrog_36	61.4	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002437_24	UniRef90_UPI0009BB8B35	71.6	0.000000000000447	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0002437_24	397290.C810_01391	105.0	4.12e-27	N/A	N/A
structural_annotation	UHGV-0002437_24	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_25	K03111	43.5	0.0000000000065	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002437_25	phrog_44	40.0	0.000000000099	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002437_25	UniRef90_K1TU99	69.3	0.0000000000000228	Single-strand binding protein	N/A
eggNOG-mapper	UHGV-0002437_25	411463.EUBVEN_00539	70.1	0.0000000000000131	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0002437_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0002437_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0002437_26	phrog_874	182.1	0	N/A	unknown function
UniRef90	UHGV-0002437_26	UniRef90_A0A6N7W7Q7	200.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0002437_26	411468.CLOSCI_00298	187.0	0	N/A	N/A
structural_annotation	UHGV-0002437_26	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_27	phrog_20593	68.6	2.7e-20	N/A	unknown function
PHROG	UHGV-0002437_29	phrog_2118	105.1	6.4e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002437_29	UniRef90_A0A2U2EKN9	221.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0002437_29	1235799.C818_02668	170.0	0	endonuclease activity	N/A
Pfam	UHGV-0002437_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0002437_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0002437_29	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_33	K00558	230.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0002437_33	phrog_116	266.8	0	DNA methyltransferase	other
UniRef90	UHGV-0002437_33	UniRef90_A0A174GZ53	929.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0002437_33	1235800.C819_02255	717.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0002437_33	MTase_II_00020	117.1	5.7e-37	Type II methyltransferase	RM
Pfam	UHGV-0002437_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0002437_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0002437_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_34	K07319	54.0	0.0000000000000025	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0002437_34	phrog_67	53.1	0.0000000000000059	DNA methyltransferase	other
UniRef90	UHGV-0002437_34	UniRef90_UPI001EE11EA1	195.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0002437_34	1298920.KI911353_gene2709	211.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0002437_34	MTase_II_00085	43.0	0.000000000012	Type II methyltransferase	RM
Pfam	UHGV-0002437_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0002437_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0002437_34	PF01555	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_35	phrog_7566	95.5	3.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0002437_35	1235800.C819_00511	100.0	1.63e-24	N/A	N/A
structural_annotation	UHGV-0002437_37	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_38	K03469	69.0	1e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0002437_38	phrog_531	63.4	4.1e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002437_38	UniRef90_A0A413YU26	268.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002437_38	1121447.JONL01000002_gene2134	75.1	0.00000000000000482	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0002437_38	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0002437_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0002437_38	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_39	phrog_3584	164.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002437_39	641107.CDLVIII_1314	152.0	1.53022e-42	N/A	N/A
structural_annotation	UHGV-0002437_39	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_43	K18830	43.6	0.0000000000062	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0002437_43	phrog_8	41.4	0.000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002437_43	UniRef90_A0A356C4L0	115.0	7.99e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002437_43	1035189.HMPREF9954_1968	48.1	0.00000104	sequence-specific DNA binding	N/A
Pfam	UHGV-0002437_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002437_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0002437_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_44	K22300	56.4	6.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0002437_44	phrog_2967	55.1	9.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002437_44	UniRef90_A0A1I2E7K8	99.4	1.51e-23	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0002437_44	1211819.CALK01000005_gene2436	70.9	0.000000000000852	Peptidase S24-like	N/A
Pfam	UHGV-0002437_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002437_44	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0002437_44	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_45	phrog_87	79.9	2.6e-23	metallo-protease	other
UniRef90	UHGV-0002437_45	UniRef90_A0A373INP4	196.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0002437_45	397288.C806_00132	192.0	0	Zn peptidase	N/A
Pfam	UHGV-0002437_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0002437_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0002437_45	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_46	phrog_1847	510.2	0	N/A	unknown function
UniRef90	UHGV-0002437_46	UniRef90_R9JJN1	479.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002437_46	1235792.C808_05258	479.0	0	N/A	N/A
Pfam	UHGV-0002437_46	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0002437_46	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0002437_46	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0002437_46	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0002437_48	K06400	371.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0002437_48	phrog_95	361.5	0	integrase	integration and excision
UniRef90	UHGV-0002437_48	UniRef90_A0A413YU13	905.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0002437_48	411462.DORLON_00823	457.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0002437_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0002437_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0002437_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0002437_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0002437_48	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0002437_49	phrog_5763	86.2	4.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0002437_49	1033744.CAEL01000026_gene1411	111.0	2.92e-26	N/A	N/A
PHROG	UHGV-0002437_50	phrog_1281	131.5	3.8e-39	N/A	unknown function
UniRef90	UHGV-0002437_50	UniRef90_UPI00164A9B39	149.0	2.84464e-43	N/A	N/A
eggNOG-mapper	UHGV-0002437_50	1508644.SFBmNL_01513	143.0	9.3901e-42	N/A	N/A
Pfam	UHGV-0002437_50	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0002437_50	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0002437_50	PF13274,COG3600	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0002437	Yes	33,798	38	89	1
UHGV-0023205	No	33,311	38	88	1
UHGV-0024654	No	33,246	38	87	1
UHGV-0003018	No	32,667	38	86	1