vOTU vOTU-119757

vOTU: vOTU-119757

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-119757
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → ERR7745783_bin.69
Taxonomy (UHGV)	vFAM-00025 → vOTU-119757
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017457
Biosample ID	N/A
Genome length (bp)	26,207 bps
CheckV completeness	70.06% (Medium-quality)
CDS count	52
CDS density	94.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508	Total connections	48	Host agreement	83.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → UBA1234 → ERR7745783_bin.69	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017457_1	phrog_392	79.4	5.7e-23	metal-dependent hydrolase	other
UniRef90	UHGV-0017457_1	UniRef90_R6YG58	234.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0017457_1	665956.HMPREF1032_03101	128.0	2.31e-35	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-0017457_1	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0017457_1	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017457_2	PF16454,NF007974	N/A	N/A	N/A	N/A
KOfam	UHGV-0017457_3	K07451	47.2	0.00000000000042	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0017457_3	phrog_119	43.6	0.0000000000033	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017457_3	UniRef90_UPI001C24FAC6	57.0	0.0000000384	HNH endonuclease	N/A
Pfam	UHGV-0017457_3	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0017457_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0017457_5	K03111	147.7	1.09301e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017457_5	phrog_44	152.1	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017457_5	UniRef90_R6XT61	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017457_5	720554.Clocl_4133	174.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0017457_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017457_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017457_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017457_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017457_5	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0017457_6	K02086	64.5	1.5e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0017457_6	phrog_186	79.6	3e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017457_6	UniRef90_A0A3E2UDK7	76.6	0.000000000000698	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0017457_6	694427.Palpr_2953	71.6	0.0000000000043	N/A	N/A
Pfam	UHGV-0017457_6	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0017457_6	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0017457_6	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0017457_6	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_7	phrog_4973	53.7	0.0000000000000034	N/A	unknown function
UniRef90	UHGV-0017457_7	UniRef90_A0A843HM15	54.3	0.0000000471	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0017457_7	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0017457_7	PF14090,NF040939	N/A	N/A	N/A	N/A
KOfam	UHGV-0017457_9	K01160	41.9	0.000000000024	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0017457_9	phrog_1682	82.6	5.2e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017457_9	UniRef90_R7FGZ0	167.0	0	Gp63	N/A
eggNOG-mapper	UHGV-0017457_9	1120985.AUMI01000019_gene2247	100.0	1.36e-25	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0017457_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0017457_9	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_10	phrog_7839	121.5	4.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0017457_10	226185.EF_2126	109.0	1.9e-29	N/A	N/A
structural_annotation	UHGV-0017457_15	PF09871,TIGR00739	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_16	phrog_8684	74.1	7.8e-22	N/A	unknown function
UniRef90	UHGV-0017457_16	UniRef90_UPI00090ABFBE	80.9	1.09e-16	YopX family protein	N/A
eggNOG-mapper	UHGV-0017457_16	762968.HMPREF9441_00543	69.7	0.000000000000453	YopX protein	N/A
Pfam	UHGV-0017457_16	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0017457_16	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0017457_16	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_28	phrog_36	64.1	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017457_28	UniRef90_UPI001244603A	58.5	0.0000000319	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017457_28	420246.GTNG_2841	57.4	0.0000000148	N/A	N/A
NCBIFam	UHGV-0017457_28	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0017457_28	PF05263,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017457_29	1121324.CLIT_8c00850	63.2	0.00000000000111	N/A	N/A
PHROG	UHGV-0017457_30	phrog_1233	54.8	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-0017457_30	UniRef90_R7IWF8	183.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017457_32	697303.Thewi_1140	50.8	0.00000734	N/A	N/A
KOfam	UHGV-0017457_33	K06909	46.5	0.00000000000043	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017457_33	phrog_5902	241.2	0	N/A	unknown function
UniRef90	UHGV-0017457_33	UniRef90_A0A0M2NI11	600.0	0	Putative terminase B protein	N/A
eggNOG-mapper	UHGV-0017457_33	1226322.HMPREF1545_03544	576.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0017457_33	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0017457_33	PF04466,PF20441,MF_04145,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_34	phrog_64	189.0	0	portal protein	head and packaging
UniRef90	UHGV-0017457_34	UniRef90_R6I230	450.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0017457_34	665956.HMPREF1032_03614	267.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0017457_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0017457_34	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_35	phrog_4502	95.9	4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0017457_35	268407.PWYN_12400	100.0	1.6e-25	N/A	N/A
UniRef90	UHGV-0017457_36	UniRef90_A0A6M0SIM4	122.0	3.93e-27	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0017457_36	1507.HMPREF0262_01176	113.0	1.7e-24	Phage minor capsid protein 2	N/A
COG	UHGV-0017457_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017457_36	TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_39	phrog_172	106.8	2.6e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0017457_39	UniRef90_A0A3D1PKZ2	305.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0017457_39	1235800.C819_00486	97.8	2.71e-22	N/A	N/A
Pfam	UHGV-0017457_39	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0017457_39	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017457_40	UniRef90_A0A3D1PN29	660.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0017457_40	86416.Clopa_0341	110.0	9.97e-24	Phage capsid family	N/A
Pfam	UHGV-0017457_40	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
COG	UHGV-0017457_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0017457_40	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017457_41	PF05135,TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017457_42	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017457_43	665956.HMPREF1032_03623	60.5	0.00000000578	N/A	N/A
structural_annotation	UHGV-0017457_43	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017457_44	665956.HMPREF1032_03624	65.1	0.0000000000114	N/A	N/A
structural_annotation	UHGV-0017457_44	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017457_45	445972.ANACOL_01851	104.0	1.74e-26	N/A	N/A
structural_annotation	UHGV-0017457_45	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_48	phrog_1535	79.0	6.4e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0017457_48	445972.ANACOL_01854	68.6	0.00000000652	tape measure	N/A
COG	UHGV-0017457_48	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0017457_49	phrog_1194	95.9	2.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0017457_49	1414720.CBYM010000002_gene561	57.4	0.00000000807	N/A	N/A
structural_annotation	UHGV-0017457_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_50	phrog_13879	257.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0017457_50	1232449.BAHV02000010_gene2725	145.0	1.01e-34	N/A	N/A
structural_annotation	UHGV-0017457_50	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0017457_51	phrog_18725	89.2	4.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0017457_51	693746.OBV_18220	70.1	0.000000000000267	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017457	Yes	26,207	31	70	1