vOTU vOTU-119865

vOTU: vOTU-119865

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-119865
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-05801 → vOTU-119865
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0468966
Biosample ID	N/A
Genome length (bp)	24,281 bps
CheckV completeness	66.36% (Medium-quality)
CDS count	38
CDS density	91.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075	Total connections	25	Host agreement	84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0468966_1	K06334	120.0	1.8e-35	cotJC; spore coat protein JC	N/A
PHROG	UHGV-0468966_1	phrog_7573	108.8	5.1e-32	N/A	unknown function
UniRef90	UHGV-0468966_1	UniRef90_A0A174DLV4	164.0	0	Protein cotJC	N/A
eggNOG-mapper	UHGV-0468966_1	1414720.CBYM010000003_gene401	164.0	0	PFAM Manganese containing catalase	N/A
Pfam	UHGV-0468966_1	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-0468966_1	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A
KOfam	UHGV-0468966_2	K06400	346.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0468966_2	phrog_95	375.3	0	integrase	integration and excision
UniRef90	UHGV-0468966_2	UniRef90_A0A6B4QDB2	696.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0468966_2	536233.CLO_0500	661.0	0	resolvase	N/A
Pfam	UHGV-0468966_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0468966_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0468966_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0468966_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0468966_2	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_3	phrog_87	94.4	8e-28	metallo-protease	other
UniRef90	UHGV-0468966_3	UniRef90_A0A8I0A568	299.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0468966_3	929506.CbC4_1185	157.0	0	Zn peptidase	N/A
Pfam	UHGV-0468966_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0468966_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0468966_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0468966_4	K22300	46.4	0.00000000000067	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0468966_4	phrog_2967	78.1	1.4e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0468966_4	UniRef90_A0A174DL41	150.0	3.15292e-43	Cro/CI family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0468966_4	1256908.HMPREF0373_00643	97.1	3.05e-23	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0468966_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0468966_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0468966_4	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0468966_5	UniRef90_A0A096AIC5	62.8	0.0000000000147	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0468966_5	1401067.HMPREF0872_06900	62.8	0.00000000000246	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0468966_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0468966_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0468966_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0468966_6	K07741	86.7	6.5e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-0468966_6	phrog_130	215.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0468966_6	UniRef90_UPI0018A9A0C6	347.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0468966_6	536233.CLO_0955	241.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0468966_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0468966_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0468966_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0468966_6	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0468966_7	536233.CLO_0503	63.5	0.000000000000461	N/A	N/A
UniRef90	UHGV-0468966_8	UniRef90_A0A174D8K3	60.1	0.0000000000416	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0468966_8	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-0468966_10	phrog_6251	255.3	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0468966_10	UniRef90_L1Q8K1	416.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0468966_10	545697.HMPREF0216_02809	416.0	0	DnaD domain protein	N/A
COG	UHGV-0468966_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0468966_11	K02315	122.3	5.2e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0468966_11	phrog_50	136.0	3.09999e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0468966_11	UniRef90_UPI001A9BD14A	444.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0468966_11	1391647.AVSV01000022_gene2532	279.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-0468966_11	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0468966_11	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0468966_11	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0468966_16	PF21344	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_17	phrog_774	63.8	3.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0468966_17	397290.C810_05225	77.4	1.77e-17	N/A	N/A
eggNOG-mapper	UHGV-0468966_19	536232.CLM_1636	162.0	0	N/A	N/A
structural_annotation	UHGV-0468966_19	PF17457	N/A	N/A	N/A	N/A
UniRef90	UHGV-0468966_21	UniRef90_UPI0018A8EB18	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0468966_21	1414720.CBYM010000040_gene1638	288.0	0	N/A	N/A
structural_annotation	UHGV-0468966_21	PF04545,MF_00683,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_22	phrog_3928	42.0	0.000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0468966_22	1414720.CBYM010000040_gene1639	86.3	5.43e-22	N/A	N/A
KOfam	UHGV-0468966_23	K04763	109.8	3.4e-32	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0468966_23	phrog_216	167.1	0	integrase	integration and excision
UniRef90	UHGV-0468966_23	UniRef90_A0A316MAM1	288.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0468966_23	642492.Clole_1851	224.0	0	integrase family	N/A
Pfam	UHGV-0468966_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0468966_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0468966_23	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0468966_24	K07451	44.0	0.000000000004	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0468966_24	phrog_119	84.4	1.3e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0468966_24	UniRef90_A0A1M5U101	122.0	3.89e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0468966_24	86416.Clopa_0335	112.0	6.83e-31	HNH nucleases	N/A
Pfam	UHGV-0468966_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0468966_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0468966_25	phrog_5110	108.9	2.5e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0468966_25	UniRef90_A0A1F1KWB1	177.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0468966_25	1211817.CCAT010000008_gene938	170.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0468966_25	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0468966_25	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0468966_25	PF05119,PF06056,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_26	phrog_9	318.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0468966_26	UniRef90_A0A3F2ZWA0	771.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0468966_26	1211817.CCAT010000008_gene939	779.0	0	Phage Terminase	N/A
Pfam	UHGV-0468966_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0468966_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0468966_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0468966_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_27	phrog_12	109.3	2.7e-32	portal protein	head and packaging
UniRef90	UHGV-0468966_27	UniRef90_A0A6I1MNZ3	403.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0468966_27	1211817.CCAT010000008_gene940	395.0	0	Phage portal protein	N/A
Pfam	UHGV-0468966_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0468966_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0468966_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0468966_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0468966_28	K06904	165.1	0	N/A	N/A
PHROG	UHGV-0468966_28	phrog_80	171.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0468966_28	UniRef90_A0A174QPT7	278.0	0	Prohead protease	N/A
eggNOG-mapper	UHGV-0468966_28	1211817.CCAT010000008_gene941	271.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0468966_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0468966_28	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0468966_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0468966_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_29	phrog_10	160.2	0	major head protein	head and packaging
UniRef90	UHGV-0468966_29	UniRef90_A0A0F3FRY7	495.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0468966_29	1211817.CCAT010000008_gene942	471.0	0	Phage capsid family	N/A
Pfam	UHGV-0468966_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0468966_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0468966_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0468966_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_30	phrog_749	85.8	3e-25	N/A	unknown function
UniRef90	UHGV-0468966_30	UniRef90_A0A3F3A0Q7	75.5	9.71e-16	Gp6 protein	N/A
eggNOG-mapper	UHGV-0468966_30	1211817.CCAT010000008_gene943	74.3	4.29e-16	N/A	N/A
UniRef90	UHGV-0468966_31	UniRef90_UPI001056B886	112.0	1.16e-29	phage head closure protein	N/A
eggNOG-mapper	UHGV-0468966_31	411459.RUMOBE_01731	80.9	3.73e-18	Phage head-tail adaptor	N/A
NCBIFam	UHGV-0468966_31	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0468966_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_32	phrog_5	62.6	9.7e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0468966_32	UniRef90_UPI001C8B911A	269.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0468966_32	649747.HMPREF0083_01006	56.2	0.0000000441	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0468966_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0468966_32	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0468966_32	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_33	phrog_78	76.0	5e-22	tail terminator	connector
UniRef90	UHGV-0468966_33	UniRef90_Q8SBP4	99.8	7.68e-25	Gp10 protein	N/A
eggNOG-mapper	UHGV-0468966_33	931276.Cspa_c10200	96.3	2.98e-24	N/A	N/A
structural_annotation	UHGV-0468966_33	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_34	phrog_88	128.6	3.7e-38	major tail protein	tail
UniRef90	UHGV-0468966_34	UniRef90_UPI001159BB09	359.0	0	major tail protein	N/A
eggNOG-mapper	UHGV-0468966_34	411468.CLOSCI_01496	207.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0468966_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0468966_34	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0468966_34	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_35	phrog_187	62.4	7.3e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0468966_35	411459.RUMOBE_01727	51.6	0.000000649	N/A	N/A
structural_annotation	UHGV-0468966_35	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_36	phrog_1272	406.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0468966_36	UniRef90_UPI001C8CC1D6	820.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0468966_36	1122146.AUHP01000010_gene1066	367.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0468966_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0468966_36	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0468966_36	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0468966_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_37	phrog_33	92.9	5.5e-27	distal tail protein Dit	tail
UniRef90	UHGV-0468966_37	UniRef90_UPI001C8B5B0F	447.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0468966_37	195103.CPF_1575	185.0	0	tail component	N/A
Pfam	UHGV-0468966_37	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0468966_37	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0468966_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0468966_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0468966_38	phrog_1067	327.9	0	minor head protein	head and packaging
UniRef90	UHGV-0468966_38	UniRef90_UPI001C8BD600	852.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0468966_38	1280689.AUJC01000011_gene1532	376.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0468966_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0468966_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0468966_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0468966_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0468966	Yes	24,281	29	66	1