vOTU vOTU-120197

vOTU: vOTU-120197

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-120197
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00227 → vGENUS-00348 → vOTU-120197
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0016205
Biosample ID	SAMEA4766051
Genome length (bp)	36,413 bps
CheckV completeness	82.32% (Medium-quality)
CDS count	58
CDS density	92.27%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975	Total connections	382	Host agreement	78.8
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016205_1	phrog_8	40.0	0.000000000089	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016205_1	UniRef90_UPI00189845EC	61.2	0.00000000148	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016205_1	1378168.N510_01712	58.2	0.0000000208	N/A	N/A
Pfam	UHGV-0016205_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0016205_1	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016205_2	UniRef90_A0A8D9PDN2	88.6	7.01e-22	DNA-binding protein	N/A
Pfam	UHGV-0016205_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0016205_2	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_3	phrog_5079	41.5	0.00000000002	N/A	unknown function
KOfam	UHGV-0016205_4	K22300	45.4	0.0000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0016205_4	UniRef90_A0A810PZI0	79.7	2.35e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016205_4	693746.OBV_25500	54.7	0.0000000033	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0016205_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016205_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0016205_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016205_6	UniRef90_A0A8D9PDM8	67.4	0.000000000000201	Pyocin activator protein	N/A
PHROG	UHGV-0016205_7	phrog_4433	193.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0016205_7	573061.Clocel_3578	126.0	1.03e-30	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0016205_7	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0016205_7	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0016205_7	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_12	phrog_155	81.8	1.1e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_12	UniRef90_A0A1C6J8G0	244.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0016205_12	1268072.PSAB_05935	168.0	0	ERF superfamily	N/A
Pfam	UHGV-0016205_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0016205_12	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_13	phrog_1389	80.8	1.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0016205_13	1347392.CCEZ01000060_gene3269	102.0	5.56e-27	N/A	N/A
structural_annotation	UHGV-0016205_13	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_14	phrog_374	61.2	2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_14	UniRef90_UPI0004B3FA8C	63.5	0.00000000471	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016205_14	1423807.BACO01000036_gene1075	71.6	0.000000000000222	N/A	N/A
structural_annotation	UHGV-0016205_14	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_15	phrog_7566	91.0	8.5e-27	N/A	unknown function
UniRef90	UHGV-0016205_15	UniRef90_A0A8D9UHC0	153.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0016205_15	693746.OBV_25470	115.0	2.11e-32	N/A	N/A
Pfam	UHGV-0016205_16	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0016205_16	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_17	K03111	161.1	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016205_17	phrog_44	155.8	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_17	UniRef90_R6GTK3	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016205_17	1007096.BAGW01000023_gene151	192.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0016205_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016205_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016205_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016205_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016205_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_18	phrog_15768	86.1	6.2e-25	N/A	unknown function
UniRef90	UHGV-0016205_18	UniRef90_UPI0019608C6C	72.4	0.0000000000206	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0016205_18	203119.Cthe_2466	116.0	6.22e-28	N/A	N/A
structural_annotation	UHGV-0016205_18	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_19	K02314	275.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0016205_19	phrog_19	251.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_19	UniRef90_A0A3D1XEC3	419.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0016205_19	1408437.JNJN01000010_gene1232	186.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0016205_19	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0016205_19	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0016205_19	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0016205_19	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_20	K01160	67.1	4.8e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0016205_20	phrog_34	62.4	8.9e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_20	UniRef90_A0A2T0APF7	145.0	1.16028e-42	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0016205_20	561177.ANHYDRO_01396	120.0	2.69e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0016205_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0016205_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0016205_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_21	K00390	47.4	3.1e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0016205_21	phrog_424	100.5	1.3e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0016205_21	UniRef90_A0A098AU96	579.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	N/A
eggNOG-mapper	UHGV-0016205_21	1235800.C819_02256	511.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0016205_21	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0016205_21	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0016205_21	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_23	K14440	59.6	2.1e-25	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0016205_23	phrog_62	205.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_23	UniRef90_A0A845MVG4	632.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0016205_23	394503.Ccel_3060	530.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0016205_23	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0016205_23	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0016205_23	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0016205_23	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_24	K24451	137.2	1.10001e-40	zim; modification methylase	N/A
PHROG	UHGV-0016205_24	phrog_67	109.3	3.2e-32	DNA methyltransferase	other
UniRef90	UHGV-0016205_24	UniRef90_A0A845MWG4	528.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0016205_24	1120971.AUCA01000053_gene371	402.0	0	DNA methylase	N/A
PADLOC	UHGV-0016205_24	MTase_II_00139	109.9	3.5e-32	Type II methyltransferase	RM
Pfam	UHGV-0016205_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0016205_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0016205_24	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0016205_25	K00558	155.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0016205_25	phrog_116	199.2	0	DNA methyltransferase	other
UniRef90	UHGV-0016205_25	UniRef90_A0A316NA61	335.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0016205_25	718252.FP2_16350	315.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0016205_25	oMTase_00004	215.7	0	orphan methyltransferase	RM
Pfam	UHGV-0016205_25	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0016205_25	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0016205_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0016205_29	phrog_599	44.2	0.0000000000043	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0016205_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0016205_29	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0016205_29	PF14354,TIGR03655,COG4888	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016205_30	UniRef90_A0A8D9PDT5	59.3	0.00000000296	Hydrogenase/urease nickel incorporation protein	N/A
eggNOG-mapper	UHGV-0016205_33	693746.OBV_18010	128.0	9.14e-36	N/A	N/A
structural_annotation	UHGV-0016205_33	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_38	phrog_606	48.0	0.00000000000017	terminase small subunit	head and packaging
UniRef90	UHGV-0016205_38	UniRef90_UPI001D07B715	218.0	0	DNA-packaging protein	N/A
PHROG	UHGV-0016205_40	phrog_434	53.0	0.0000000000000055	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0016205_40	1408437.JNJN01000010_gene1241	93.6	7.21e-24	N/A	N/A
eggNOG-mapper	UHGV-0016205_41	1232436.CAPF01000086_gene855	60.1	0.000000021	N/A	N/A
KOfam	UHGV-0016205_42	K14060	149.0	3.64338e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0016205_42	phrog_125	194.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016205_42	UniRef90_R7EUM7	277.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0016205_42	693746.OBV_34630	231.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0016205_42	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0016205_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0016205_42	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016205_43	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_44	phrog_38	152.7	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0016205_44	UniRef90_A0A6I2QXZ5	891.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0016205_44	1298920.KI911353_gene2682	296.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0016205_44	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0016205_44	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016205_44	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_45	phrog_64	234.2	0	portal protein	head and packaging
UniRef90	UHGV-0016205_45	UniRef90_A0A6I2QXE1	688.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0016205_45	1123263.AUKY01000015_gene1609	407.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0016205_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0016205_45	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_47	phrog_1328	132.7	2.3e-39	major head protein	head and packaging
UniRef90	UHGV-0016205_47	UniRef90_UPI00164DD2D5	591.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016205_47	665956.HMPREF1032_03619	239.0	0	N/A	N/A
Pfam	UHGV-0016205_47	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0016205_47	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016205_48	UniRef90_UPI001898B4B4	142.0	7.66931e-42	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0016205_48	1298920.KI911353_gene2658	59.7	0.000000000346	N/A	N/A
Pfam	UHGV-0016205_48	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0016205_48	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016205_49	1121866.AUGK01000003_gene1432	73.6	0.00000000000000554	N/A	N/A
eggNOG-mapper	UHGV-0016205_50	1298920.KI911353_gene2654	60.8	0.00000000375	N/A	N/A
structural_annotation	UHGV-0016205_51	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_52	phrog_158	52.4	0.000000000000011	major tail protein	tail
UniRef90	UHGV-0016205_52	UniRef90_UPI00164D954A	199.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0016205_52	1232453.BAIF02000058_gene1634	100.0	3.04e-25	N/A	N/A
Pfam	UHGV-0016205_52	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0016205_52	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016205_53	UniRef90_UPI0018999178	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016205_53	469596.HMPREF9488_01311	81.6	1.22e-18	N/A	N/A
Pfam	UHGV-0016205_53	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0016205_53	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016205_54	1211844.CBLM010000023_gene987	53.5	0.0000000989	N/A	N/A
PHROG	UHGV-0016205_55	phrog_1535	144.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0016205_55	UniRef90_A0A1C6L0H4	548.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0016205_55	1121866.AUGK01000003_gene1437	276.0	0	phage tail tape measure protein	N/A
COG	UHGV-0016205_55	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0016205_55	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_56	phrog_1194	120.2	9.1e-36	N/A	unknown function
UniRef90	UHGV-0016205_56	UniRef90_A0A0B3VTI7	104.0	1.11e-26	N/A	N/A
eggNOG-mapper	UHGV-0016205_56	1414720.CBYM010000002_gene561	112.0	2.37e-30	N/A	N/A
Pfam	UHGV-0016205_56	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0016205_56	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_57	phrog_6616	114.1	2.7e-34	tail protein	tail
UniRef90	UHGV-0016205_57	UniRef90_R5GWP5	71.6	0.00000000148	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0016205_57	469596.HMPREF9488_01318	299.0	0	N/A	N/A
structural_annotation	UHGV-0016205_57	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0016205_58	phrog_372	214.7	0	tail protein	tail
UniRef90	UHGV-0016205_58	UniRef90_UPI001D0897E0	159.0	3.96e-39	N/A	N/A
eggNOG-mapper	UHGV-0016205_58	1235802.C823_05263	158.0	9.04e-40	N/A	N/A
Pfam	UHGV-0016205_58	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0016205_58	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0016205_58	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0016205	Yes	36,413	55	82	1