vOTU vOTU-120504

vOTU: vOTU-120504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-120504
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00223 → vOTU-120504
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1454383
Biosample ID	N/A
Genome length (bp)	34,527 bps
CheckV completeness	85.54% (Medium-quality)
CDS count	55
CDS density	93.34%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	214	Host agreement	93.93
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1454383_1	phrog_27197	43.0	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1454383_1	645991.Sgly_0315	88.6	1.74e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1454383_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-1454383_4	phrog_674	146.5	1.69557e-43	N/A	unknown function
UniRef90	UHGV-1454383_4	UniRef90_UPI000553F60F	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-1454383_4	1408437.JNJN01000039_gene373	188.0	0	N/A	N/A
Pfam	UHGV-1454383_4	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1454383_4	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_5	K07455	174.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1454383_5	phrog_148	202.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1454383_5	UniRef90_A0A329URJ6	462.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1454383_5	1408437.JNJN01000039_gene372	374.0	0	RecT family	N/A
Pfam	UHGV-1454383_5	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1454383_5	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1454383_5	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1454383_5	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_6	phrog_392	114.8	9.6e-34	metal-dependent hydrolase	other
UniRef90	UHGV-1454383_6	UniRef90_UPI0012DD1D82	263.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1454383_6	665956.HMPREF1032_03101	201.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1454383_6	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1454383_6	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1454383_6	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_7	K02086	45.7	0.00000000000079	dnaD; DNA replication protein	N/A
PHROG	UHGV-1454383_7	phrog_186	69.6	5.1e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1454383_7	UniRef90_UPI001874F31C	126.0	7.06e-32	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1454383_7	749413.E5DV82_9VIRU	55.1	0.000004	calcium ion binding	N/A
Pfam	UHGV-1454383_7	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1454383_7	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1454383_7	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1454383_7	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_8	phrog_9804	45.4	0.0000000000012	N/A	unknown function
KOfam	UHGV-1454383_9	K03111	142.1	5.89947e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1454383_9	phrog_44	137.0	6.59998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1454383_9	UniRef90_A0A1Q6T150	229.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1454383_9	657322.FPR_24250	219.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1454383_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1454383_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1454383_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1454383_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1454383_9	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_10	K01160	55.1	0.0000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1454383_10	phrog_34	54.6	0.0000000000000023	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1454383_10	UniRef90_A0A3G2R5K0	129.0	8.27e-36	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1454383_10	796940.HMPREF9628_00163	105.0	3.25e-27	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1454383_10	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1454383_10	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1454383_10	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_19	phrog_36	61.8	1.4e-17	transcriptional regulator	transcription regulation
COG	UHGV-1454383_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1454383_19	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_20	K03497	59.7	4.8e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1454383_20	phrog_620	155.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1454383_20	UniRef90_UPI001E2E3568	151.0	2.71852e-43	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1454383_20	12402.Q708N6_9CAUD	140.0	2.97e-37	N-methyltransferase activity	N/A
PADLOC	UHGV-1454383_20	MTase_II_00015	96.0	6.2e-28	Type II methyltransferase	RM
Pfam	UHGV-1454383_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-1454383_20	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_23	K06909	397.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1454383_23	phrog_3717	158.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1454383_23	UniRef90_UPI001C3B9235	625.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1454383_23	411471.SUBVAR_06507	579.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1454383_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1454383_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1454383_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1454383_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1454383_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_24	phrog_64	172.2	0	portal protein	head and packaging
UniRef90	UHGV-1454383_24	UniRef90_UPI0018A8A301	610.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1454383_24	673376.F2VHW1_9CAUD	213.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1454383_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1454383_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_25	phrog_595	116.5	1.8e-34	head maturation protease	head and packaging
UniRef90	UHGV-1454383_25	UniRef90_A0A7X5E1T7	425.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1454383_25	1504822.CCNO01000013_gene286	187.0	0	cell adhesion	N/A
Pfam	UHGV-1454383_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1454383_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1454383_25	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_28	phrog_5	75.3	1.2e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1454383_28	UniRef90_A0A3A9EIF3	194.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1454383_28	1280685.AUKC01000004_gene1630	113.0	1.54e-30	N/A	N/A
Pfam	UHGV-1454383_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1454383_28	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1454383_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-1454383_29	UniRef90_A0A6B9SU02	73.2	0.00000000000206	Fibronectin autolysin	N/A
structural_annotation	UHGV-1454383_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_30	phrog_544	121.2	9.2e-36	major head protein	head and packaging
UniRef90	UHGV-1454383_30	UniRef90_A0A1C6B5R0	334.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1454383_30	476272.RUMHYD_01776	317.0	0	N/A	N/A
structural_annotation	UHGV-1454383_30	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_33	phrog_17977	77.9	8.5e-23	N/A	unknown function
UniRef90	UHGV-1454383_33	UniRef90_UPI00141211AB	85.9	2.68e-19	head-tail adaptor protein	N/A
structural_annotation	UHGV-1454383_33	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_34	phrog_17405	46.8	0.00000000000043	head protein	head and packaging
structural_annotation	UHGV-1454383_34	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_35	phrog_885	97.5	1.1e-28	major tail protein	tail
UniRef90	UHGV-1454383_35	UniRef90_A0A843J9F0	166.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1454383_35	1111121.HMPREF1247_0789	180.0	0	N/A	N/A
structural_annotation	UHGV-1454383_35	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_36	phrog_18646	45.5	0.0000000000013	N/A	unknown function
PHROG	UHGV-1454383_38	phrog_20920	122.2	2e-36	N/A	unknown function
eggNOG-mapper	UHGV-1454383_38	1536770.R50345_22870	120.0	1.64e-33	N/A	N/A
structural_annotation	UHGV-1454383_38	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_39	phrog_6900	225.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1454383_39	UniRef90_A0A0D0SGC8	318.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1454383_39	1437608.BBIA_2554	272.0	0	phage tail tape measure protein	N/A
COG	UHGV-1454383_39	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1454383_39	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_40	phrog_36410	60.9	1.4e-17	N/A	unknown function
UniRef90	UHGV-1454383_40	UniRef90_A0A160INM5	84.3	0.00000000000000233	Phage tail protein	N/A
eggNOG-mapper	UHGV-1454383_40	748224.HMPREF9436_00700	132.0	3.03e-34	Phage tail protein	N/A
structural_annotation	UHGV-1454383_40	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_41	phrog_538	198.6	0	minor tail protein	tail
UniRef90	UHGV-1454383_41	UniRef90_A0A4U7JBL2	134.0	5.28e-33	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1454383_41	748224.HMPREF9436_03324	206.0	0	N/A	N/A
Pfam	UHGV-1454383_41	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1454383_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_42	phrog_9534	201.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-1454383_42	748224.HMPREF9436_00702	192.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1454383_42	PF21567	N/A	N/A	N/A	N/A
KOfam	UHGV-1454383_45	K02395	83.4	4.7e-24	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1454383_45	phrog_7698	162.0	0	endolysin	lysis
UniRef90	UHGV-1454383_45	UniRef90_E5DTQ2	239.0	0	Putative muramidase	N/A
eggNOG-mapper	UHGV-1454383_45	877411.JMMA01000002_gene2384	233.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1454383_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1454383_45	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-1454383_45	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1454383_45	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1454383_46	97138.C820_00248	62.4	0.0000000000107	N/A	N/A
PHROG	UHGV-1454383_47	phrog_1129	86.8	1.1e-25	holin	lysis
UniRef90	UHGV-1454383_47	UniRef90_A0A1G9U2I2	105.0	1.32e-27	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-1454383_47	476272.RUMHYD_03138	88.6	1.05e-21	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1454383_47	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1454383_47	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-1454383_48	phrog_3754	91.3	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1454383_48	476272.RUMHYD_01764	149.0	5.60519e-45	N/A	N/A
PHROG	UHGV-1454383_49	phrog_21718	99.6	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1454383_49	476272.RUMHYD_01768	85.5	3.83e-19	N/A	N/A
PHROG	UHGV-1454383_50	phrog_22984	71.3	5.2e-22	N/A	unknown function
PHROG	UHGV-1454383_51	phrog_16490	170.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1454383_51	1408437.JNJN01000043_gene803	78.2	0.000000000000021	N/A	N/A
PHROG	UHGV-1454383_52	phrog_20016	195.5	0	N/A	unknown function
UniRef90	UHGV-1454383_52	UniRef90_A0A285PT46	204.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1454383_52	1226322.HMPREF1545_00077	177.0	0	N/A	N/A
structural_annotation	UHGV-1454383_52	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1454383_53	476272.RUMHYD_01772	50.8	0.00000645	N/A	N/A
structural_annotation	UHGV-1454383_53	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1454383_54	1226322.HMPREF1545_00079	72.8	0.00000000000000359	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1454383	Yes	34,527	51	86	1