vOTU vOTU-121105

vOTU: vOTU-121105

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-121105
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vOTU-121105
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0181629
Biosample ID	N/A
Genome length (bp)	19,084 bps
CheckV completeness	52.13% (Medium-quality)
CDS count	31
CDS density	89.86%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	26	Host agreement	80.77
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	8	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0181629_2	K22300	67.4	3.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0181629_2	phrog_8	65.3	1.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181629_2	UniRef90_UPI0015595971	69.7	0.000000000000312	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0181629_2	1094508.Tsac_0848	70.1	0.0000000000000482	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181629_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181629_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181629_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181629_3	UniRef90_A0A3D3Y4M8	58.5	0.000000285	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0181629_3	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0181629_3	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_4	phrog_3989	278.9	0	N/A	unknown function
UniRef90	UHGV-0181629_4	UniRef90_UPI0003170388	393.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0181629_4	1396418.BATQ01000120_gene3072	271.0	0	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	N/A
Pfam	UHGV-0181629_4	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0181629_4	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0181629_4	PF00533,NF004844	N/A	N/A	N/A	N/A
KOfam	UHGV-0181629_5	K18843	76.4	5.6e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-0181629_5	phrog_497	83.1	4.9e-24	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181629_5	UniRef90_A0A810Q7W6	196.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0181629_5	641112.ACOK01000116_gene2617	175.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0181629_5	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0181629_5	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0181629_5	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0181629_6	K14059	224.4	0	int; integrase	N/A
PHROG	UHGV-0181629_6	phrog_1	176.5	0	integrase	integration and excision
UniRef90	UHGV-0181629_6	UniRef90_A0A3D1VH24	325.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0181629_6	742738.HMPREF9460_04031	268.0	0	Phage integrase family	N/A
Pfam	UHGV-0181629_6	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0181629_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181629_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0181629_6	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181629_7	UniRef90_A0A7M1RS47	55.5	0.000000854	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0181629_7	1408437.JNJN01000043_gene801	76.6	0.00000000000000335	N/A	N/A
structural_annotation	UHGV-0181629_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_10	phrog_22984	50.6	0.000000000000035	N/A	unknown function
structural_annotation	UHGV-0181629_11	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181629_12	UniRef90_A0A8D9PDT6	64.3	0.0000000000137	Transcriptional regulatory protein	N/A
Pfam	UHGV-0181629_12	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0181629_12	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0181629_13	phrog_1129	67.4	1.6e-19	holin	lysis
UniRef90	UHGV-0181629_13	UniRef90_UPI00189DD88C	127.0	1.46e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0181629_13	1226322.HMPREF1545_00069	125.0	1.46e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0181629_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0181629_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_14	phrog_1863	51.2	0.0000000000000084	N/A	unknown function
eggNOG-mapper	UHGV-0181629_14	1226322.HMPREF1545_04027	72.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-0181629_15	phrog_14030	162.9	0	N/A	unknown function
UniRef90	UHGV-0181629_15	UniRef90_A0A173XSJ1	196.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0181629_15	1121115.AXVN01000051_gene809	189.0	0	NLP P60 protein	N/A
Pfam	UHGV-0181629_15	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0181629_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0181629_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0181629_15	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_17	phrog_27545	86.9	2.4e-25	N/A	unknown function
UniRef90	UHGV-0181629_17	UniRef90_R6ELD6	71.2	0.000000000000526	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0181629_17	1122971.BAME01000151_gene6566	100.0	2.44e-24	N/A	N/A
eggNOG-mapper	UHGV-0181629_20	742733.HMPREF9469_05009	60.8	0.0000000212	N/A	N/A
structural_annotation	UHGV-0181629_20	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_21	phrog_13589	165.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0181629_21	742733.HMPREF9469_05009	224.0	0	N/A	N/A
structural_annotation	UHGV-0181629_23	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181629_24	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_25	phrog_26795	115.6	2.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0181629_25	796940.HMPREF9628_00133	95.5	2.19e-19	N/A	N/A
structural_annotation	UHGV-0181629_25	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181629_26	1195236.CTER_5103	132.0	1.68e-29	N/A	N/A
structural_annotation	UHGV-0181629_26	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_27	phrog_33680	108.7	2.1e-32	N/A	unknown function
UniRef90	UHGV-0181629_27	UniRef90_A0A1M6L1P7	204.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0181629_27	1408415.JHXL01000001_gene400	179.0	8.40779e-45	phage tail tape measure protein	N/A
COG	UHGV-0181629_27	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0181629_27	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181629_29	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0181629_30	phrog_88	54.3	0.0000000000000018	major tail protein	tail
UniRef90	UHGV-0181629_30	UniRef90_A0A174CNN5	67.4	0.000000000233	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0181629_30	1195236.CTER_5106	72.8	0.000000000000341	phage major tail protein, phi13 family	N/A
COG	UHGV-0181629_30	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181629_30	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181629_31	1203606.HMPREF1526_00974	70.5	0.000000000000117	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0181629	Yes	19,084	58	52	1