vOTU vOTU-121357

vOTU: vOTU-121357

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-121357
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-06592 → vOTU-121357
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter_A → Mediterraneibacter_A butyricigenes
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0036747
Biosample ID	SAMEA4765942
Genome length (bp)	31,120 bps
CheckV completeness	87.48% (Medium-quality)
CDS count	58
CDS density	90.07%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter_A → Mediterraneibacter_A butyricigenes	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0036747_1	1007096.BAGW01000036_gene2668	72.4	0.000000000000122	N/A	N/A
UniRef90	UHGV-0036747_2	UniRef90_A0A374E9Q0	79.7	0.0000000000000357	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0036747_2	1235798.C817_04596	88.2	3.83e-17	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0036747_2	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0036747_2	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_3	phrog_14030	124.2	9e-37	N/A	unknown function
UniRef90	UHGV-0036747_3	UniRef90_A0A6N3GME3	157.0	8.40779e-45	Ricin-type beta-trefoil lectin domain protein	N/A
eggNOG-mapper	UHGV-0036747_3	1232452.BAIB02000007_gene1613	138.0	6.92e-38	NlpC/P60 family	N/A
Pfam	UHGV-0036747_3	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0036747_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-0036747_4	phrog_13289	372.1	0	tail protein	tail
UniRef90	UHGV-0036747_4	UniRef90_UPI001570BE36	811.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0036747_4	1235798.C817_02568	456.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0036747_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0036747_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0036747_4	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0036747_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_5	phrog_33	78.6	1.2e-22	distal tail protein Dit	tail
UniRef90	UHGV-0036747_5	UniRef90_A0A844KEE5	234.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0036747_5	1232452.BAIB02000007_gene1615	200.0	0	phage tail	N/A
Pfam	UHGV-0036747_5	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0036747_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0036747_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0036747_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_6	phrog_1272	213.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0036747_6	UniRef90_UPI0006C3C180	858.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0036747_6	1035184.HMPREF1042_1328	333.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0036747_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0036747_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0036747_8	phrog_88	100.0	2.2e-29	major tail protein	tail
UniRef90	UHGV-0036747_8	UniRef90_UPI0006C1EB28	300.0	0	phage tail protein	N/A
NCBIFam	UHGV-0036747_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0036747_8	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_9	phrog_5	54.9	0.0000000000000025	tail completion or Neck1 protein	connector
UniRef90	UHGV-0036747_9	UniRef90_D4M595	188.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0036747_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0036747_9	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036747_10	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036747_11	UniRef90_UPI00189B1559	174.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0036747_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0036747_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_13	phrog_10	78.4	8.2e-23	major head protein	head and packaging
UniRef90	UHGV-0036747_13	UniRef90_D4M591	640.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0036747_13	1232452.BAIB02000007_gene1625	493.0	0	Phage capsid family	N/A
Pfam	UHGV-0036747_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0036747_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0036747_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0036747_13	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_14	K01358	165.8	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0036747_14	phrog_94	235.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0036747_14	UniRef90_UPI00156EEE56	322.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0036747_14	1232452.BAIB02000007_gene1626	272.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0036747_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0036747_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0036747_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_15	phrog_12	80.2	1.7e-23	portal protein	head and packaging
UniRef90	UHGV-0036747_15	UniRef90_A0A844KEF3	458.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0036747_15	1232452.BAIB02000007_gene1627	277.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0036747_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0036747_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0036747_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_16	phrog_9	246.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0036747_16	UniRef90_D4M588	991.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0036747_16	1232452.BAIB02000007_gene1629	529.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0036747_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0036747_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0036747_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0036747_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_17	phrog_5110	99.1	2.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0036747_17	UniRef90_A0A1C5LZF0	109.0	1.22e-28	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0036747_17	349161.Dred_2608	79.0	9.44e-18	N/A	N/A
Pfam	UHGV-0036747_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0036747_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036747_20	UniRef90_A0A8I0AQA2	89.4	4.72e-22	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036747_20	1007096.BAGW01000035_gene1350	75.1	3.36e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0036747_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0036747_20	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_21	phrog_36	68.6	1.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036747_21	UniRef90_UPI001899709D	138.0	4.12e-39	N/A	N/A
eggNOG-mapper	UHGV-0036747_21	1235799.C818_04213	129.0	2.06e-36	sigma factor activity	N/A
COG	UHGV-0036747_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0036747_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_22	phrog_7024	60.7	1.7e-17	N/A	unknown function
PHROG	UHGV-0036747_24	phrog_15198	51.9	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0036747_24	UniRef90_UPI001D046CFA	130.0	1.52e-36	N/A	N/A
eggNOG-mapper	UHGV-0036747_24	665950.HMPREF1025_02540	80.5	7.18e-17	N/A	N/A
Pfam	UHGV-0036747_24	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0036747_25	568816.Acin_1246	58.9	0.0000000032	N/A	N/A
PHROG	UHGV-0036747_26	phrog_20593	47.5	0.00000000000033	N/A	unknown function
PHROG	UHGV-0036747_27	phrog_26445	89.5	2.1e-26	N/A	unknown function
UniRef90	UHGV-0036747_27	UniRef90_A0A412MF67	141.0	1.18e-38	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0036747_27	411461.DORFOR_00012	146.0	2.12997e-41	N/A	N/A
structural_annotation	UHGV-0036747_27	PF13384,MF_00475,TIGR02531,COG1710	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_28	phrog_15077	228.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0036747_28	1235800.C819_02581	142.0	2.93e-38	N/A	N/A
PHROG	UHGV-0036747_29	phrog_15768	94.9	3.8e-29	N/A	unknown function
UniRef90	UHGV-0036747_29	UniRef90_A0A0J9CGG0	137.0	1.94e-36	N/A	N/A
eggNOG-mapper	UHGV-0036747_29	1121344.JHZO01000003_gene982	124.0	2.14e-32	N/A	N/A
AcrCatalog	UHGV-0036747_29	cluster_14472	136.0	3.50002e-41	NA	N/A
Pfam	UHGV-0036747_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0036747_29	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_31	phrog_7566	80.4	1.6e-23	N/A	unknown function
UniRef90	UHGV-0036747_31	UniRef90_A0A373MWE5	157.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0036747_31	1304866.K413DRAFT_1198	65.9	0.000000000000938	N/A	N/A
PHROG	UHGV-0036747_32	phrog_72	52.4	0.0000000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0036747_32	411490.ANACAC_00804	127.0	2.18e-34	N/A	N/A
structural_annotation	UHGV-0036747_32	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036747_33	UniRef90_UPI00129DCFE7	62.4	0.000000000141	HTH domain-containing protein	N/A
PHROG	UHGV-0036747_41	phrog_36464	66.4	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0036747_41	411461.DORFOR_01136	86.3	2.24e-21	N/A	N/A
structural_annotation	UHGV-0036747_41	PF09035	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_42	K04763	230.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0036747_42	phrog_1	175.5	0	integrase	integration and excision
UniRef90	UHGV-0036747_42	UniRef90_UPI00156E0BE9	338.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0036747_42	742726.HMPREF9448_01263	209.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0036747_42	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0036747_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036747_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0036747_42	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_43	K14059	178.6	0	int; integrase	N/A
PHROG	UHGV-0036747_43	phrog_1	168.5	0	integrase	integration and excision
UniRef90	UHGV-0036747_43	UniRef90_A0A369B630	302.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0036747_43	525367.HMPREF0556_11470	299.0	0	Phage integrase family	N/A
Pfam	UHGV-0036747_43	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0036747_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036747_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036747_43	PF00589,PF14659,MF_02055,NF001399,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_44	K03427	45.8	0.00000000000072	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0036747_44	phrog_5696	202.8	0	N/A	unknown function
UniRef90	UHGV-0036747_44	UniRef90_A0A1C5WE14	253.0	0	Type I restriction-modification system methyltransferase subunit	N/A
eggNOG-mapper	UHGV-0036747_44	500632.CLONEX_03432	137.0	8.07e-37	N-6 DNA Methylase	N/A
Pfam	UHGV-0036747_44	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0036747_44	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0036747_44	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0036747_50	phrog_750	90.6	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0036747_50	478749.BRYFOR_08527	73.9	0.00000000000000137	N/A	N/A
structural_annotation	UHGV-0036747_50	PF13835,NF040858	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036747_51	PF11195	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036747_52	COG1321	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_53	K18830	73.6	3e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0036747_53	phrog_4	53.8	0.0000000000000047	transcriptional repressor	transcription regulation
UniRef90	UHGV-0036747_53	UniRef90_D4M569	191.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0036747_53	1280698.AUJS01000007_gene1002	129.0	1.06e-36	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0036747_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036747_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0036747_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_55	K23779	53.1	0.000000000000007	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0036747_55	UniRef90_UPI000E486504	94.7	2.6e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0036747_55	411461.DORFOR_01128	72.4	3.06e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0036747_55	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0036747_55	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_56	K14623	364.8	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0036747_56	phrog_8036	389.1	0	N/A	unknown function
UniRef90	UHGV-0036747_56	UniRef90_A0A414UZM1	457.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0036747_56	665950.HMPREF1025_02565	449.0	0	N/A	N/A
AcrCatalog	UHGV-0036747_56	cluster_17589	147.0	1.96182e-44	NA	N/A
PADLOC	UHGV-0036747_56	Specificity_I_00032	344.3	0	Type I specificity subunit	RM
Pfam	UHGV-0036747_56	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0036747_56	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0036747_56	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0036747_56	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0036747_57	K14059	188.7	0	int; integrase	N/A
PHROG	UHGV-0036747_57	phrog_1	191.6	0	integrase	integration and excision
UniRef90	UHGV-0036747_57	UniRef90_UPI0019602787	471.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0036747_57	1235798.C817_05483	466.0	0	Phage integrase family	N/A
Pfam	UHGV-0036747_57	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0036747_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036747_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036747_57	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036747	Yes	31,120	42	87	1