vOTU vOTU-121423

vOTU: vOTU-121423

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-121423
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00095 → vSUBFAM-06161 → vOTU-121423
Host lineage	Bacteria → Cyanobacteria → Vampirovibrionia → Gastranaerophilales → Gastranaerophilaceae → UBA2883 → UBA2883 sp900768915
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0059602
Biosample ID	N/A
Genome length (bp)	39,853 bps
CheckV completeness	69.59% (Medium-quality)
CDS count	64
CDS density	95.86%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Cyanobacteria → Vampirovibrionia → Gastranaerophilales → Gastranaerophilaceae → UBA2883 → UBA2883 sp900768915	Total connections	3	Host agreement	100
PHIST-predicted host lineage	Bacteria → Cyanobacteria → Vampirovibrionia → Gastranaerophilales → Gastranaerophilaceae → CAG-196 → CAG-196 sp002102975	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0059602_2	phrog_315	113.0	1.9e-33	endolysin	lysis
UniRef90	UHGV-0059602_2	UniRef90_A0A520G3N9	121.0	1.26e-31	PG_binding_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_2	459495.SPLC1_S260970	110.0	5.9e-28	secretion activating protein	N/A
Pfam	UHGV-0059602_2	PF05838	N/A	N/A	Glycosyl hydrolase 108	Glyco_hydro_108
COG	UHGV-0059602_2	COG3926	N/A	N/A	Lysozyme family protein	N/A
structural_annotation	UHGV-0059602_2	PF05838,MF_04136,NF040573,COG3926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059602_4	NF007458	N/A	N/A	N/A	N/A
UniRef90	UHGV-0059602_7	UniRef90_A0A1F6Q3F4	57.8	0.0000000352	HNHc domain-containing protein	N/A
COG	UHGV-0059602_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0059602_7	PF14279	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059602_9	PF14301	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_10	K00986	127.3	1.6e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0059602_10	phrog_1423	242.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059602_10	UniRef90_R7I1Z4	361.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_10	411468.CLOSCI_01505	275.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0059602_10	Cas1_IIIb_Cas1_IIIb	92.1	1.1e-26	N/A	CRISPR-CAS
Pfam	UHGV-0059602_10	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0059602_10	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0059602_10	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_11	phrog_5302	251.6	0	tail protein	tail
UniRef90	UHGV-0059602_11	UniRef90_UPI00195EE3FC	197.0	0	bacterial Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_11	665956.HMPREF1032_00690	252.0	0	N/A	N/A
structural_annotation	UHGV-0059602_11	PF16323,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_12	phrog_31	158.0	0	baseplate hub protein Tal	tail
UniRef90	UHGV-0059602_12	UniRef90_R6PHE2	872.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_12	1122947.FR7_2540	189.0	0	cellulase activity	N/A
Pfam	UHGV-0059602_12	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0059602_12	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0059602_12	PF13550,PF16323,PF20086,NF040662,NF010681,COG4733	N/A	N/A	N/A	N/A
Pfam	UHGV-0059602_13	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
structural_annotation	UHGV-0059602_13	PF00877,TIGR02219,COG3271	N/A	N/A	N/A	N/A
Pfam	UHGV-0059602_14	PF09343	N/A	N/A	N/A	DUF2460
structural_annotation	UHGV-0059602_14	PF09931,PF05939,PF06995,TIGR01600,COG4672,COG4718,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_18	phrog_9959	164.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0059602_18	UniRef90_A0A8D9PAQ0	369.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_18	945713.IALB_0073	185.0	2.8026e-45	tape measure	N/A
Pfam	UHGV-0059602_18	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0059602_18	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0059602_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0059602_18	PF20155,TIGR01760,NF033930,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_21	phrog_88	55.9	6.2e-16	major tail protein	tail
eggNOG-mapper	UHGV-0059602_21	1440053.JOEI01000012_gene4341	53.1	0.00000391	N/A	N/A
NCBIFam	UHGV-0059602_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0059602_21	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_22	phrog_1072	58.8	7.7e-17	N/A	unknown function
PHROG	UHGV-0059602_23	phrog_27	43.0	0.0000000000089	tail completion or Neck1 protein	connector
UniRef90	UHGV-0059602_23	UniRef90_A0A0A8TGZ1	56.2	0.00000155	N/A	N/A
PHROG	UHGV-0059602_24	phrog_82	59.8	3.6e-17	head closure Hc1	connector
eggNOG-mapper	UHGV-0059602_24	391619.PGA1_c18380	72.4	0.00000000000000422	N/A	N/A
KOfam	UHGV-0059602_26	K01358	165.2	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0059602_26	phrog_617	416.0	0	major head protein	head and packaging
UniRef90	UHGV-0059602_26	UniRef90_UPI001ADDBCF8	384.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0059602_26	1541883.A0A088FRT0_9CAUD	348.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0059602_26	PF00574	N/A	N/A	Clp protease	CLP_protease
Pfam	UHGV-0059602_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0059602_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
PHROG	UHGV-0059602_27	phrog_21	276.7	0	portal protein	head and packaging
UniRef90	UHGV-0059602_27	UniRef90_A0A6I2UUI3	387.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0059602_27	1541883.A0A088FVG5_9CAUD	392.0	0	virion assembly	N/A
Pfam	UHGV-0059602_27	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0059602_27	TIGR01539.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0059602_27	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_28	phrog_5774	53.7	0.0000000000000033	head-tail joining	connector
eggNOG-mapper	UHGV-0059602_28	1541883.A0A088FQK4_9CAUD	51.2	0.000000407	N/A	N/A
KOfam	UHGV-0059602_29	K21512	572.4	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0059602_29	phrog_15	667.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0059602_29	UniRef90_A0A2D3WLK7	652.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0059602_29	198467.NP92_02805	605.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0059602_29	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0059602_29	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0059602_29	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0059602_29	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0059602_29	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_30	K22014	63.9	2.9e-18	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0059602_30	phrog_57	79.0	8.1e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0059602_30	UniRef90_A0A1I5MM69	75.9	0.000000000000061	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
eggNOG-mapper	UHGV-0059602_30	1401067.HMPREF0872_03420	67.8	0.0000000000084	N/A	N/A
COG	UHGV-0059602_30	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0059602_30	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059602_31	PF16784,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_40	phrog_98	66.5	3.9e-19	N/A	unknown function
UniRef90	UHGV-0059602_40	UniRef90_A0A0M5M636	65.9	0.0000000000393	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_40	1347392.CCEZ01000060_gene3277	54.3	0.000000256	YopX protein	N/A
Pfam	UHGV-0059602_40	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0059602_40	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_42	phrog_2245	88.3	9.7e-26	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0059602_42	293826.Amet_2596	76.6	0.00000000000000178	N/A	N/A
structural_annotation	UHGV-0059602_44	PF01096,TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_45	phrog_8514	58.4	1.4e-16	N/A	unknown function
PHROG	UHGV-0059602_47	phrog_24658	95.1	3e-28	N/A	unknown function
PHROG	UHGV-0059602_51	phrog_415	83.2	3.5e-24	polynucleotide kinase	other
eggNOG-mapper	UHGV-0059602_51	1201288.M900_1480	59.3	0.00000000531	HAD superfamily, subfamily IIIB (Acid phosphatase)	N/A
COG	UHGV-0059602_51	COG2503	N/A	N/A	Predicted secreted acid phosphatase	N/A
structural_annotation	UHGV-0059602_51	PF03767,MF_01022,TIGR01533,COG2503	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_52	K00571	103.4	3.1e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0059602_52	phrog_67	77.9	3.9e-29	DNA methyltransferase	other
UniRef90	UHGV-0059602_52	UniRef90_A0A6B9LAD6	165.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0059602_52	742727.HMPREF9447_04874	147.0	2.95001e-41	DNA methylase	N/A
PADLOC	UHGV-0059602_52	MTase_II_00172	72.7	8.3e-21	Type II methyltransferase	RM
Pfam	UHGV-0059602_52	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0059602_52	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0059602_52	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_54	K07685	48.4	0.00000000000013	narP; two-component system, NarL family, nitrate/nitrite response regulator NarP	N/A
Pfam	UHGV-0059602_54	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0059602_54	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
KOfam	UHGV-0059602_55	K03111	89.3	7.9e-26	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0059602_55	phrog_44	91.8	1.1e-26	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059602_55	UniRef90_L8LTK8	87.8	4.43e-20	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0059602_55	102232.GLO73106DRAFT_00032160	87.8	7.44e-21	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0059602_55	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0059602_55	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0059602_55	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0059602_55	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0059602_55	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_57	K02315	131.1	1.1e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0059602_57	phrog_50	120.3	1.9e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059602_57	UniRef90_A0A843HM17	221.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0059602_57	1158338.JNLJ01000001_gene402	63.9	0.00000000344	DNA replication protein DnaC	N/A
Pfam	UHGV-0059602_57	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0059602_57	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0059602_57	PF01695,PF06827,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0059602_58	phrog_16826	103.8	2e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059602_58	UniRef90_A0A1Q6TYQ9	148.0	2.43e-38	Phage_rep_O domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_58	1308866.J416_11787	63.9	0.0000000158	Bacteriophage replication protein O	N/A
Pfam	UHGV-0059602_58	PF04492	N/A	N/A	Bacteriophage replication protein O	Phage_rep_O
COG	UHGV-0059602_58	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0059602_58	PF04492,TIGR01610,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0059602_62	K01356	75.0	1.7e-21	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0059602_62	phrog_4	101.2	1.5e-29	transcriptional repressor	transcription regulation
UniRef90	UHGV-0059602_62	UniRef90_A0A292QUL5	144.0	1.61e-39	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0059602_62	382245.ASA_3870	66.6	0.000000000174	Repressor	N/A
Pfam	UHGV-0059602_62	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0059602_62	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
KOfam	UHGV-0059602_64	K06400	291.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0059602_64	phrog_95	265.3	0	integrase	integration and excision
UniRef90	UHGV-0059602_64	UniRef90_R6PLG2	314.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0059602_64	323098.Nwi_1250	214.0	0	Recombinase zinc beta ribbon domain	N/A
Pfam	UHGV-0059602_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0059602_64	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0059602_64	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0059602_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0059602_64	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0059602	Yes	39,853	37	70	1