vOTU vOTU-122918

vOTU: vOTU-122918

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-122918
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vOTU-122918
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0099788
Biosample ID	SAMEA3708682
Genome length (bp)	29,027 bps
CheckV completeness	82.11% (Medium-quality)
CDS count	39
CDS density	94.06%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	199	Host agreement	84.92
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	75	Host agreement	92

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0099788_1	phrog_8470	222.6	0	N/A	unknown function
UniRef90	UHGV-0099788_1	UniRef90_UPI001C01E393	587.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0099788_1	1280698.AUJS01000007_gene1018	797.0	0	N/A	N/A
Pfam	UHGV-0099788_1	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0099788_1	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_2	phrog_15077	92.7	7.1e-27	N/A	unknown function
UniRef90	UHGV-0099788_2	UniRef90_A0A3A6HZA9	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0099788_2	1280698.AUJS01000007_gene1019	372.0	0	N/A	N/A
structural_annotation	UHGV-0099788_2	PF11300,NF033725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099788_3	1196322.A370_05726	63.2	0.00000000000668	N/A	N/A
PHROG	UHGV-0099788_4	phrog_7566	114.9	2.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0099788_4	665950.HMPREF1025_02547	167.0	0	N/A	N/A
KOfam	UHGV-0099788_9	K03427	199.7	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0099788_9	phrog_6380	323.4	0	DNA methyltransferase	other
UniRef90	UHGV-0099788_9	UniRef90_D4MVN1	499.0	0	Type I restriction-modification system methyltransferase subunit	N/A
eggNOG-mapper	UHGV-0099788_9	592010.GCWU000182_001448	265.0	0	HsdM N-terminal domain	N/A
PADLOC	UHGV-0099788_9	MTase_I_00005	218.6	0	Type I methyltransferase	RM
Pfam	UHGV-0099788_9	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0099788_9	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0099788_9	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099788_10	592010.GCWU000182_001449	80.1	3.44e-17	Type I restriction modification DNA specificity domain	N/A
structural_annotation	UHGV-0099788_10	PF01420,COG0732	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_12	phrog_36	67.0	3.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0099788_12	UniRef90_UPI000E49B095	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0099788_12	658655.HMPREF0988_02569	152.0	0	sigma factor activity	N/A
Pfam	UHGV-0099788_12	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0099788_12	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0099788_12	PF07374,MF_00674,TIGR02984,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_13	phrog_5110	97.3	1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0099788_13	UniRef90_A0A1C5LZF0	98.2	3.95e-24	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0099788_13	1211817.CCAT010000008_gene938	85.5	1.59e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-0099788_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0099788_13	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099788_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_14	phrog_9	256.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0099788_14	UniRef90_D4M588	1112.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0099788_14	1232452.BAIB02000007_gene1629	528.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0099788_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0099788_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0099788_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0099788_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_15	phrog_12	64.7	6.6e-19	portal protein	head and packaging
UniRef90	UHGV-0099788_15	UniRef90_UPI00156D5DC9	586.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0099788_15	1232452.BAIB02000007_gene1627	280.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0099788_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0099788_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0099788_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0099788_16	K01358	113.8	2.2e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0099788_16	phrog_94	178.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0099788_16	UniRef90_D4M590	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0099788_16	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0099788_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0099788_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0099788_16	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_17	phrog_10	86.4	2.9e-25	major head protein	head and packaging
UniRef90	UHGV-0099788_17	UniRef90_D4M591	714.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0099788_17	1232452.BAIB02000007_gene1625	478.0	0	Phage capsid family	N/A
Pfam	UHGV-0099788_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0099788_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0099788_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0099788_17	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099788_19	UniRef90_D4M593	242.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0099788_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099788_20	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_21	phrog_5	47.8	0.00000000000034	tail completion or Neck1 protein	connector
UniRef90	UHGV-0099788_21	UniRef90_D4M595	245.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0099788_21	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0099788_21	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_22	phrog_88	101.2	1.1e-29	major tail protein	tail
UniRef90	UHGV-0099788_22	UniRef90_D4M596	385.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0099788_22	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0099788_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0099788_22	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0099788_24	K10421	55.3	6.4e-16	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0099788_24	phrog_23464	198.4	0	N/A	unknown function
UniRef90	UHGV-0099788_24	UniRef90_UPI0006C3C180	342.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0099788_24	1232452.BAIB02000007_gene1616	483.0	0	phage tail tape measure protein	N/A
COG	UHGV-0099788_24	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0099788_25	phrog_33	66.1	8.6e-19	distal tail protein Dit	tail
UniRef90	UHGV-0099788_25	UniRef90_UPI000E50043B	359.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0099788_25	1235798.C817_04593	206.0	0	phage tail	N/A
COG	UHGV-0099788_25	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0099788_25	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_26	phrog_13289	397.7	0	tail protein	tail
UniRef90	UHGV-0099788_26	UniRef90_A0A373N6D1	1186.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0099788_26	1235798.C817_02568	478.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0099788_26	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0099788_26	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0099788_26	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0099788_26	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_27	phrog_11037	137.8	1.10001e-40	N/A	unknown function
UniRef90	UHGV-0099788_27	UniRef90_A0A373N7H3	659.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0099788_27	33035.JPJF01000093_gene2240	330.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0099788_27	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0099788_27	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0099788_27	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0099788_27	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0099788_28	K07296	43.0	0.000000000005	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-0099788_28	phrog_10972	44.9	0.0000000000014	tail fiber protein	tail
UniRef90	UHGV-0099788_28	UniRef90_A0A374E9Q0	397.0	0	Collagen-like protein	N/A
Pfam	UHGV-0099788_28	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0099788_28	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_29	phrog_16164	74.3	9.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0099788_29	33035.JPJF01000093_gene2236	163.0	0	N/A	N/A
structural_annotation	UHGV-0099788_29	PF10651,NF032891	N/A	N/A	N/A	N/A
KOfam	UHGV-0099788_30	K24213	44.3	0.0000000000014	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0099788_30	phrog_15437	67.2	1.9e-19	tail fiber protein	tail
eggNOG-mapper	UHGV-0099788_30	198110.B3FJ92_9CAUD	53.1	0.00000141	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0099788_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0099788_31	K16628	44.6	0.00000000000044	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0099788_31	phrog_819	60.5	1.9e-17	tail protein	tail
UniRef90	UHGV-0099788_31	UniRef90_UPI001A9A6571	358.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0099788_31	877414.ATWA01000019_gene2051	81.3	0.0000000000000274	N/A	N/A
Pfam	UHGV-0099788_31	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0099788_31	PF05737	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099788_32	UniRef90_A0A416RA37	158.0	1.82169e-44	Acyl carrier protein	N/A
eggNOG-mapper	UHGV-0099788_32	1235799.C818_04237	286.0	0	N/A	N/A
structural_annotation	UHGV-0099788_32	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_33	phrog_20274	145.3	2.49431e-43	N/A	unknown function
UniRef90	UHGV-0099788_33	UniRef90_A0A173TUK0	203.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0099788_33	411902.CLOBOL_05645	156.0	0	N/A	N/A
Pfam	UHGV-0099788_33	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0099788_33	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099788_33	PF06541,COG4905	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_34	phrog_37799	73.1	1.4e-21	N/A	unknown function
UniRef90	UHGV-0099788_34	UniRef90_A0A373N7C7	281.0	0	Protein utxA	N/A
eggNOG-mapper	UHGV-0099788_34	411470.RUMGNA_02086	143.0	1.13001e-41	N/A	N/A
Pfam	UHGV-0099788_34	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0099788_34	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0099788_34	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0099788_34	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099788_35	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0099788_36	K07273	177.5	0	acm; lysozyme	N/A
PHROG	UHGV-0099788_36	phrog_291	133.8	1.5e-39	endolysin	lysis
UniRef90	UHGV-0099788_36	UniRef90_D4M5A7	694.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0099788_36	515620.EUBELI_01316	189.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0099788_36	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0099788_36	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0099788_36	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099788_38	478749.BRYFOR_07651	188.0	0	N/A	N/A
structural_annotation	UHGV-0099788_38	TIGR03826	N/A	N/A	N/A	N/A
PHROG	UHGV-0099788_39	phrog_2329	62.4	6.1e-18	N/A	unknown function
UniRef90	UHGV-0099788_39	UniRef90_UPI0018A8B4F7	108.0	4.79e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
structural_annotation	UHGV-0099788_39	PF04014,COG2336	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0099788	Yes	29,027	42	82	1