vOTU vOTU-123497

vOTU: vOTU-123497

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-123497
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-04519 → vGENUS-07807 → vOTU-123497
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1421018
Biosample ID	SAMEA2738071
Genome length (bp)	23,064 bps
CheckV completeness	56.03% (Medium-quality)
CDS count	28
CDS density	97.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella	Total connections	9	Host agreement	77.78
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1421018_1	37105.F8J1B3_9CAUD	50.8	0.00000111	Clp protease	N/A
PHROG	UHGV-1421018_2	phrog_10	186.8	0	major head protein	head and packaging
UniRef90	UHGV-1421018_2	UniRef90_UPI00080769BA	511.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1421018_2	279010.BL03504	254.0	0	capsid protein	N/A
Pfam	UHGV-1421018_2	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1421018_2	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1421018_2	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1421018_2	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_3	phrog_749	98.7	3.2e-29	N/A	unknown function
UniRef90	UHGV-1421018_3	UniRef90_UPI001BE74BBD	101.0	5.59e-26	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1421018_3	240302.BN982_00187	106.0	6.38e-29	N/A	N/A
structural_annotation	UHGV-1421018_3	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_4	phrog_933	65.7	6.1e-19	N/A	unknown function
PHROG	UHGV-1421018_5	phrog_4014	66.2	7.3e-19	head-tail adaptor	connector
UniRef90	UHGV-1421018_5	UniRef90_A0A133ZZW5	181.0	0	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-1421018_5	1408438.JADD01000021_gene412	61.6	0.000000000129	N/A	N/A
structural_annotation	UHGV-1421018_5	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_6	phrog_15828	65.9	5.8e-19	N/A	unknown function
structural_annotation	UHGV-1421018_6	PF06141	N/A	N/A	N/A	N/A
UniRef90	UHGV-1421018_7	UniRef90_A0A133ZZW8	266.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1421018_7	592010.GCWU000182_001490	90.9	2.31e-21	N/A	N/A
structural_annotation	UHGV-1421018_7	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_8	phrog_88	58.3	1.4e-16	major tail protein	tail
UniRef90	UHGV-1421018_8	UniRef90_A0A133ZZV4	436.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1421018_8	1408438.JADD01000021_gene415	130.0	9.2e-35	N/A	N/A
structural_annotation	UHGV-1421018_8	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_9	phrog_16464	76.4	3.8e-22	N/A	unknown function
PHROG	UHGV-1421018_11	phrog_13339	413.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1421018_11	UniRef90_A0A133ZZY0	2110.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-1421018_11	1225805.J7KGW1_9CAUD	311.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1421018_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1421018_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-1421018_11	PF10145,PF05384,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_12	phrog_33	76.1	7.1e-22	distal tail protein Dit	tail
UniRef90	UHGV-1421018_12	UniRef90_A0A133ZZV2	466.0	0	Phage tail component protein	N/A
eggNOG-mapper	UHGV-1421018_12	592010.GCWU000182_001495	160.0	0	N/A	N/A
structural_annotation	UHGV-1421018_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_13	phrog_1330	207.4	0	tail protein	tail
UniRef90	UHGV-1421018_13	UniRef90_A0A133ZZW7	2337.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1421018_13	562981.HMPREF0428_00970	549.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1421018_13	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1421018_13	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1421018_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1421018_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1421018_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1421018_15	525255.HMPREF0077_0366	55.1	0.00000302	N/A	N/A
Pfam	UHGV-1421018_15	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1421018_15	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_17	phrog_4257	97.7	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1421018_17	562981.HMPREF0428_00966	213.0	0	N/A	N/A
PHROG	UHGV-1421018_18	phrog_1129	44.9	0.00000000000075	holin	lysis
Pfam	UHGV-1421018_18	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-1421018_19	phrog_1309	245.9	0	endolysin	lysis
UniRef90	UHGV-1421018_19	UniRef90_A0A133ZZY6	431.0	0	CHAP domain protein	N/A
eggNOG-mapper	UHGV-1421018_19	1321820.HMPREF1983_00914	389.0	0	CHAP domain	N/A
Pfam	UHGV-1421018_19	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1421018_19	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1421018_19	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1421018_19	PF08460,PF05382,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_20	phrog_12732	99.4	2.7e-29	N/A	unknown function
UniRef90	UHGV-1421018_20	UniRef90_O03943	57.8	0.0000000966	Rorf148 protein	N/A
AcrCatalog	UHGV-1421018_20	cluster_25206	75.1	8.29e-20	NA	N/A
PHROG	UHGV-1421018_22	phrog_27058	138.9	1.99993e-41	N/A	unknown function
structural_annotation	UHGV-1421018_22	PF20874	N/A	N/A	N/A	N/A
KOfam	UHGV-1421018_24	K14440	51.9	4.7e-25	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1421018_24	phrog_62	198.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1421018_24	UniRef90_A0A133ZZX9	801.0	0	Helicase protein	N/A
eggNOG-mapper	UHGV-1421018_24	1169152.AXVD01000040_gene916	241.0	0	helicase activity	N/A
Pfam	UHGV-1421018_24	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1421018_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1421018_24	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1421018_24	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1421018_25	K00390	47.9	0.000000000000014	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1421018_25	phrog_2302	334.7	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1421018_25	UniRef90_A0A133ZZZ6	899.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1421018_25	1211817.CCAT010000049_gene2441	546.0	0	N/A	N/A
Pfam	UHGV-1421018_25	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
Pfam	UHGV-1421018_25	PF11922	N/A	N/A	N/A	DUF3440
COG	UHGV-1421018_25	COG3969	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1421018_25	PF11922,PF01507,MF_00063,NF006327,COG3969	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_26	phrog_2159	242.4	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1421018_26	UniRef90_A0A133ZZZ4	350.0	0	Immunoglobulin-binding regulator B family protein	N/A
eggNOG-mapper	UHGV-1421018_26	1206110.L0P6I1_9CAUD	271.0	0	N-methyltransferase activity	N/A
Pfam	UHGV-1421018_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-1421018_26	PF02195,PF18579,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1421018_27	phrog_2277	51.3	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1421018_27	1423734.JCM14202_3583	59.7	0.0000000000228	N/A	N/A
eggNOG-mapper	UHGV-1421018_28	546270.GEMHA0001_0694	209.0	0	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer	N/A
Pfam	UHGV-1421018_28	PF16595	N/A	N/A	PAM-interacting domain of CRISPR-associated endonuclease Cas9	Cas9_PI
COG	UHGV-1421018_28	COG3513	N/A	N/A	CRISPR-Cas system type-II protein Cas9	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1421018	Yes	23,064	31	56	1