vOTU vOTU-123535

vOTU: vOTU-123535

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-123535
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-01069 → vOTU-123535
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1466274
Biosample ID	N/A
Genome length (bp)	20,669 bps
CheckV completeness	50.71% (Medium-quality)
CDS count	33
CDS density	89.66%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	175	Host agreement	90.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1466274_3	phrog_5	80.2	3.6e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1466274_3	UniRef90_A0A3A9EIF3	181.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1466274_3	1280685.AUKC01000004_gene1630	98.6	1.26e-24	N/A	N/A
Pfam	UHGV-1466274_3	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1466274_3	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1466274_3	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_4	phrog_478	128.9	1.9e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1466274_4	UniRef90_R6E548	169.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1466274_4	1111121.HMPREF1247_0834	99.0	7.42e-25	N/A	N/A
UniRef90	UHGV-1466274_5	UniRef90_A0A6B9SU02	87.0	1.12e-17	Fibronectin autolysin	N/A
structural_annotation	UHGV-1466274_5	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_6	phrog_544	293.4	0	major head protein	head and packaging
UniRef90	UHGV-1466274_6	UniRef90_UPI0019576143	393.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1466274_6	411471.SUBVAR_06940	384.0	0	N/A	N/A
NCBIFam	UHGV-1466274_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1466274_6	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_8	phrog_17977	87.2	1.1e-25	N/A	unknown function
UniRef90	UHGV-1466274_8	UniRef90_A0A285PT57	92.0	1.03e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1466274_8	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466274_9	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_10	phrog_885	72.9	3.5e-21	major tail protein	tail
UniRef90	UHGV-1466274_10	UniRef90_A0A843J9F0	183.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1466274_10	1504822.CCNO01000012_gene492	214.0	0	N/A	N/A
structural_annotation	UHGV-1466274_10	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_11	phrog_18646	51.1	0.00000000000002	N/A	unknown function
PHROG	UHGV-1466274_13	phrog_6900	211.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1466274_13	UniRef90_A0A1P8BMM1	125.0	1.21e-32	Tail tapemeasure protein	N/A
eggNOG-mapper	UHGV-1466274_13	545697.HMPREF0216_02859	152.0	2.66247e-44	domain protein	N/A
COG	UHGV-1466274_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466274_13	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_14	phrog_59	112.3	2.7e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466274_14	UniRef90_A0A7D4FJN5	242.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1466274_14	1423775.BAMN01000011_gene594	239.0	0	HNH endonuclease domain protein	N/A
PADLOC	UHGV-1466274_14	HEase_00016	60.2	9.9e-18	homing endonuclease	RM
Pfam	UHGV-1466274_14	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1466274_14	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1466274_15	phrog_5493	109.3	2e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1466274_15	536233.CLO_1577	151.0	7.42e-37	tape measure	N/A
COG	UHGV-1466274_15	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1466274_16	phrog_33	75.4	1.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-1466274_16	UniRef90_A0A2X2UUQ3	126.0	8.34e-32	Phage putative tail component	N/A
eggNOG-mapper	UHGV-1466274_16	1582149.A0A0A8WHP7_9CAUD	113.0	8.83e-28	Phage tail protein	N/A
structural_annotation	UHGV-1466274_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_17	phrog_1067	378.4	0	minor head protein	head and packaging
UniRef90	UHGV-1466274_17	UniRef90_UPI00164A5272	495.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1466274_17	1160721.RBI_I01574	382.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1466274_17	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1466274_17	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1466274_17	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1466274_17	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1466274_18	UniRef90_UPI000C79F998	80.9	0.000000000000454	H-type lectin domain-containing protein	N/A
structural_annotation	UHGV-1466274_18	PF10651,NF041074	N/A	N/A	N/A	N/A
KOfam	UHGV-1466274_20	K02395	79.2	8.5e-23	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1466274_20	phrog_7698	162.5	0	endolysin	lysis
UniRef90	UHGV-1466274_20	UniRef90_E5DTQ2	247.0	0	Putative muramidase	N/A
eggNOG-mapper	UHGV-1466274_20	1410624.JNKK01000045_gene544	236.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1466274_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1466274_20	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-1466274_20	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1466274_20	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_21	phrog_4105	100.1	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1466274_21	657322.FPR_27220	156.0	0	N/A	N/A
PHROG	UHGV-1466274_22	phrog_1129	79.7	2e-23	holin	lysis
UniRef90	UHGV-1466274_22	UniRef90_UPI00051B7422	94.0	4.68e-23	phage holin family protein	N/A
eggNOG-mapper	UHGV-1466274_22	1121115.AXVN01000006_gene2171	92.0	4.78e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1466274_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1466274_22	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1466274_23	78345.BMERY_0692	81.6	1.52e-18	N/A	N/A
structural_annotation	UHGV-1466274_23	PF07825,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1466274_25	phrog_3754	93.6	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1466274_25	476272.RUMHYD_01764	144.0	8.32371e-43	N/A	N/A
PHROG	UHGV-1466274_26	phrog_21718	110.4	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-1466274_26	397290.C810_05210	88.6	5.74e-20	N/A	N/A
PHROG	UHGV-1466274_27	phrog_22984	75.1	1.5e-22	N/A	unknown function
PHROG	UHGV-1466274_28	phrog_16490	182.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1466274_28	1408437.JNJN01000043_gene803	81.6	0.00000000000000113	N/A	N/A
PHROG	UHGV-1466274_29	phrog_20016	204.4	0	N/A	unknown function
UniRef90	UHGV-1466274_29	UniRef90_A0A285PT46	208.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1466274_29	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-1466274_29	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466274_30	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1466274_31	1226322.HMPREF1545_00079	66.6	0.00000000000128	N/A	N/A
KOfam	UHGV-1466274_33	K14059	153.2	2.8026e-45	int; integrase	N/A
PHROG	UHGV-1466274_33	phrog_1	147.3	1.30321e-43	integrase	integration and excision
UniRef90	UHGV-1466274_33	UniRef90_A0A1Y4T0F9	276.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1466274_33	1007096.BAGW01000023_gene159	210.0	0	Phage integrase family	N/A
Pfam	UHGV-1466274_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1466274_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1466274_33	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1466274	Yes	20,669	52	51	1