vOTU vOTU-123734

vOTU: vOTU-123734

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-123734
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03311 → vOTU-123734
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-632
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0000159
Biosample ID	N/A
Genome length (bp)	38,212 bps
CheckV completeness	83.29% (Medium-quality)
CDS count	50
CDS density	92.88%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-632	Total connections	44	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-632 → CAG-632 sp900539185	Total connections	10	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0000159_1	K14059	167.9	0	int; integrase	N/A
PHROG	UHGV-0000159_1	phrog_1	181.0	0	integrase	integration and excision
UniRef90	UHGV-0000159_1	UniRef90_A0A4P6M877	285.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0000159_1	1280698.AUJS01000007_gene999	237.0	0	Phage integrase family	N/A
Pfam	UHGV-0000159_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000159_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0000159_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_3	phrog_20886	62.9	2.9e-18	N/A	unknown function
UniRef90	UHGV-0000159_3	UniRef90_UPI000C757FC8	57.4	0.00000000269	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0000159_3	411462.DORLON_00820	53.5	0.0000000463	N/A	N/A
Pfam	UHGV-0000159_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0000159_3	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0000159_4	K22300	48.0	0.00000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0000159_4	phrog_2967	50.4	0.000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000159_4	UniRef90_A0A417IXU4	125.0	5.08e-34	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0000159_4	658655.HMPREF0988_02594	97.1	1.79e-22	Helix-turn-helix	N/A
Pfam	UHGV-0000159_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000159_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0000159_5	UniRef90_UPI0018F66D57	90.9	1.31e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_5	1321814.HMPREF9089_00909	59.7	0.0000000000476	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0000159_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0000159_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_6	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_8	phrog_3292	51.1	0.000000000000021	N/A	unknown function
UniRef90	UHGV-0000159_8	UniRef90_UPI001D0DF0C3	88.6	8.79e-22	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_8	1051501.AYTL01000027_gene762	81.3	1.16e-19	KTSC domain	N/A
Pfam	UHGV-0000159_8	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-0000159_8	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-0000159_8	PF13619	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000159_9	UniRef90_R5VU56	73.2	0.0000000000000116	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-0000159_9	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_13	phrog_26484	49.4	0.000000000000074	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_13	UniRef90_W7C052	72.8	0.00000000000000241	PC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_13	525367.HMPREF0556_10879	69.3	0.00000000000000946	Transcriptional Coactivator p15 (PC4)	N/A
Pfam	UHGV-0000159_13	PF02229	N/A	N/A	Transcriptional Coactivator p15 (PC4)	PC4
COG	UHGV-0000159_13	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_13	COG4443	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_14	phrog_22695	77.7	4.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0000159_14	1089548.KI783301_gene2636	77.4	5.46e-16	N/A	N/A
KOfam	UHGV-0000159_15	K07465	44.1	0.000000000002	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0000159_15	phrog_69	336.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_15	UniRef90_UPI00189C4093	475.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000159_15	1235799.C818_04197	445.0	0	N/A	N/A
Pfam	UHGV-0000159_15	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0000159_15	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0000159_15	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_16	phrog_633	53.6	0.0000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000159_16	UniRef90_D1AHM3	69.3	0.000000000000557	Putative transcriptional regulator, AsnC family	N/A
eggNOG-mapper	UHGV-0000159_16	526218.Sterm_1394	69.3	0.0000000000000935	Transcriptional regulator	N/A
COG	UHGV-0000159_16	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0000159_16	PF04703,MF_00732,NF033788,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_17	phrog_112	194.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_17	UniRef90_A0A396KWH9	322.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000159_17	1235799.C818_04198	284.0	0	N/A	N/A
Pfam	UHGV-0000159_17	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0000159_17	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_18	phrog_15077	131.1	0	N/A	unknown function
UniRef90	UHGV-0000159_18	UniRef90_A0A354J797	161.0	1.26005e-41	RNA_pol_A_CTD domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_18	1298920.KI911353_gene4863	109.0	5.47e-23	N/A	N/A
structural_annotation	UHGV-0000159_18	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_19	phrog_5781	73.2	3.8e-21	N/A	unknown function
UniRef90	UHGV-0000159_19	UniRef90_A0A3D5LSK2	96.3	1.09e-23	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0000159_19	1095750.HMPREF9970_1671	72.8	0.00000000000000379	N/A	N/A
Pfam	UHGV-0000159_19	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0000159_19	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0000159_19	PF14359,MF_03036,NF010181,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000159_21	1449050.JNLE01000003_gene3902	90.9	1.01e-19	N/A	N/A
Pfam	UHGV-0000159_21	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
KOfam	UHGV-0000159_22	K02334	826.6	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0000159_22	phrog_17	390.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_22	UniRef90_UPI001896A801	987.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0000159_22	1235799.C818_04199	905.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0000159_22	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0000159_22	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0000159_22	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_23	phrog_256	1046.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_23	UniRef90_A0A396QJJ4	1151.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0000159_23	1235799.C818_04200	1083.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0000159_23	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0000159_23	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0000159_23	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_24	phrog_93	62.3	7.2e-18	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_24	UniRef90_UPI00083038AD	142.0	5.84061e-42	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_24	1235799.C818_04201	126.0	2.43e-36	VRR_NUC	N/A
Pfam	UHGV-0000159_24	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0000159_24	PF01870,MF_01490,NF002585,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0000159_25	K14440	131.0	5.1e-39	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0000159_25	phrog_62	406.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000159_25	UniRef90_UPI00067F1E30	754.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0000159_25	1235799.C818_04202	735.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0000159_25	DpdE_00010	101.5	1e-29	DpdE	DPD
Pfam	UHGV-0000159_25	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0000159_25	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0000159_25	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0000159_25	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_29	PF19865	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_30	phrog_2412	100.4	1.4e-29	N/A	unknown function
UniRef90	UHGV-0000159_30	UniRef90_A0A6Z7A1E4	65.1	0.000000000433	Stress-induced protein	N/A
eggNOG-mapper	UHGV-0000159_30	1125712.HMPREF1316_1524	92.8	9.86e-22	N/A	N/A
KOfam	UHGV-0000159_31	K06909	116.9	2.3e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0000159_31	phrog_10250	173.6	0	N/A	unknown function
UniRef90	UHGV-0000159_31	UniRef90_A0A3D2KEK1	694.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0000159_31	397290.C810_05187	588.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0000159_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0000159_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0000159_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0000159_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_32	phrog_533	298.3	0	portal protein	head and packaging
UniRef90	UHGV-0000159_32	UniRef90_A0A3D2KHB8	585.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0000159_32	476272.RUMHYD_01758	418.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0000159_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_33	phrog_581	256.2	0	minor head protein	head and packaging
UniRef90	UHGV-0000159_33	UniRef90_A0A359MUF5	258.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0000159_33	642492.Clole_0816	228.0	0	N/A	N/A
Pfam	UHGV-0000159_33	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0000159_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_33	PF06152,PF18812	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_35	phrog_3675	103.6	9e-31	N/A	unknown function
UniRef90	UHGV-0000159_35	UniRef90_UPI001C02868E	135.0	4.35e-39	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0000159_35	1235799.C818_04221	111.0	1.88e-30	YjcQ protein	N/A
Pfam	UHGV-0000159_35	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0000159_35	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_36	phrog_194	77.3	2.6e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0000159_36	UniRef90_UPI001D14C9C8	129.0	5.29e-34	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0000159_36	476272.RUMHYD_01775	124.0	1.3e-32	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0000159_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0000159_37	phrog_247	268.4	0	major head protein	head and packaging
UniRef90	UHGV-0000159_37	UniRef90_A0A316M710	499.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0000159_37	536233.CLO_0886	403.0	0	N/A	N/A
COG	UHGV-0000159_37	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0000159_37	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_38	phrog_541	78.9	5.2e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0000159_38	476272.RUMHYD_01778	93.2	5.14e-22	N/A	N/A
PHROG	UHGV-0000159_39	phrog_3366	77.1	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0000159_39	33035.JPJF01000106_gene3129	56.2	0.0000000173	N/A	N/A
structural_annotation	UHGV-0000159_39	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_40	phrog_556	92.7	1.5e-27	minor head protein	head and packaging
UniRef90	UHGV-0000159_40	UniRef90_UPI0014302C23	89.7	2.22e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0000159_40	476272.RUMHYD_01780	90.9	2.17e-21	N/A	N/A
Pfam	UHGV-0000159_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0000159_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_41	phrog_3266	57.0	2.9e-16	tail completion	connector
eggNOG-mapper	UHGV-0000159_41	1120746.CCNL01000014_gene2101	60.1	0.000000000902	N/A	N/A
structural_annotation	UHGV-0000159_41	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_42	phrog_3099	141.0	6.19934e-42	N/A	unknown function
eggNOG-mapper	UHGV-0000159_42	411902.CLOBOL_00129	155.0	0	N/A	N/A
structural_annotation	UHGV-0000159_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_43	phrog_11299	73.5	3.3e-21	N/A	unknown function
structural_annotation	UHGV-0000159_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_44	phrog_706	124.1	1e-36	N/A	unknown function
UniRef90	UHGV-0000159_44	UniRef90_A0A1M7NJ66	213.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0000159_44	1449050.JNLE01000003_gene3882	182.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0000159_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0000159_44	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-0000159_45	K10421	40.8	0.000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0000159_45	phrog_1535	181.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0000159_45	UniRef90_A0A1I2KTM2	114.0	3.01e-22	Phage-related protein	N/A
eggNOG-mapper	UHGV-0000159_45	1280692.AUJL01000027_gene2150	129.0	1.03e-27	phage tail tape measure protein	N/A
COG	UHGV-0000159_45	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_45	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000159_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_47	phrog_6616	282.6	0	tail protein	tail
UniRef90	UHGV-0000159_47	UniRef90_A0A412RR71	205.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0000159_47	33035.JPJF01000043_gene1002	169.0	1.48005e-41	N/A	N/A
structural_annotation	UHGV-0000159_47	PF05954,PF16532,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0000159_48	phrog_24103	54.7	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0000159_48	1163671.JAGI01000002_gene1216	68.6	0.00000000137	Phage Tail Collar Domain	N/A
COG	UHGV-0000159_48	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0000159_49	phrog_4105	73.6	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0000159_49	1256908.HMPREF0373_00464	57.8	0.00000000141	N/A	N/A
PHROG	UHGV-0000159_50	phrog_1129	88.4	3.6e-26	holin	lysis
UniRef90	UHGV-0000159_50	UniRef90_A0A893W7Y5	113.0	8.18e-31	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0000159_50	1232453.BAIF02000013_gene3227	112.0	2.77e-31	N/A	N/A
Pfam	UHGV-0000159_50	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0000159_50	PF16079	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000159	Yes	38,212	44	83	1