vOTU vOTU-123786

vOTU: vOTU-123786

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-123786
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00223 → vOTU-123786
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0333930
Biosample ID	N/A
Genome length (bp)	33,253 bps
CheckV completeness	81.43% (Medium-quality)
CDS count	53
CDS density	93.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	137	Host agreement	92.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0333930_1	phrog_27197	48.9	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0333930_1	645991.Sgly_0315	88.6	1.11e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0333930_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0333930_4	phrog_659	204.4	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0333930_4	UniRef90_UPI0009E55993	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0333930_4	1507.HMPREF0262_00431	197.0	0	N/A	N/A
Pfam	UHGV-0333930_4	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0333930_4	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_5	phrog_1389	65.6	7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0333930_5	883156.HMPREF9282_01223	60.8	0.000000000203	N/A	N/A
structural_annotation	UHGV-0333930_5	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_6	phrog_7566	55.0	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0333930_6	1507.HMPREF0262_00433	50.4	0.00000134	N/A	N/A
KOfam	UHGV-0333930_7	K03111	136.5	3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0333930_7	phrog_44	139.9	1.6e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0333930_7	UniRef90_A0A6N8H4T4	206.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0333930_7	657322.FPR_24250	197.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0333930_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0333930_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0333930_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0333930_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0333930_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_8	phrog_16304	59.0	1e-16	N/A	unknown function
Pfam	UHGV-0333930_8	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0333930_8	PF19808	N/A	N/A	N/A	N/A
Pfam	UHGV-0333930_9	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
KOfam	UHGV-0333930_10	K01160	56.8	6.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0333930_10	phrog_34	62.0	1.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0333930_10	UniRef90_UPI0018ABA1B6	144.0	1.18003e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0333930_10	875454.BAEW01000002_gene491	96.3	8.17e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0333930_10	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0333930_10	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0333930_10	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0333930_11	K00571	110.5	2.1e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0333930_11	phrog_67	99.3	1.1e-30	DNA methyltransferase	other
UniRef90	UHGV-0333930_11	UniRef90_A0A3A6E967	428.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0333930_11	1449342.JQMR01000001_gene1025	371.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0333930_11	MTase_II_00157	82.1	1.7e-25	Type II methyltransferase	RM
Pfam	UHGV-0333930_11	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0333930_11	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0333930_11	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0333930_15	PF16069,NF040508	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_16	phrog_2118	100.3	2.3e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0333930_16	UniRef90_A0A417HX51	198.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0333930_16	1291050.JAGE01000001_gene468	119.0	2.95e-33	endonuclease activity	N/A
Pfam	UHGV-0333930_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0333930_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0333930_16	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_17	phrog_924	47.9	0.00000000000026	N/A	unknown function
UniRef90	UHGV-0333930_17	UniRef90_A0A4R4IL87	52.8	0.000000253	N/A	N/A
Pfam	UHGV-0333930_17	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0333930_17	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_19	phrog_36	61.8	1.4e-17	transcriptional regulator	transcription regulation
COG	UHGV-0333930_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0333930_19	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0333930_20	K03497	62.5	9.8e-18	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0333930_20	phrog_620	157.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0333930_20	UniRef90_UPI001E2E3568	154.0	1.68156e-44	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0333930_20	1487921.DP68_08835	142.0	4.56e-38	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0333930_20	MTase_II_00015	97.7	1.8e-28	Type II methyltransferase	RM
Pfam	UHGV-0333930_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0333930_20	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0333930_20	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_21	phrog_842	50.0	0.000000000000051	beta-glucosyl-HMC-alpha-glucosyltransferase	other
Pfam	UHGV-0333930_21	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
KOfam	UHGV-0333930_23	K06909	392.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0333930_23	phrog_3717	158.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0333930_23	UniRef90_UPI001C3B9235	624.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0333930_23	411471.SUBVAR_06507	573.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0333930_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0333930_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0333930_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0333930_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0333930_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_24	phrog_64	169.1	0	portal protein	head and packaging
UniRef90	UHGV-0333930_24	UniRef90_UPI0018A8A301	610.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0333930_24	673376.F2VHW1_9CAUD	214.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0333930_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0333930_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_25	phrog_115	107.1	1.1e-31	minor head protein	head and packaging
UniRef90	UHGV-0333930_25	UniRef90_A0A7X5E1T7	451.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0333930_25	1504822.CCNO01000013_gene286	174.0	4.2039e-45	cell adhesion	N/A
Pfam	UHGV-0333930_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0333930_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0333930_25	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0333930_26	PF06442,MF_01194,NF000331,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_27	phrog_5	74.3	2.3e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-0333930_27	UniRef90_UPI001411BC8C	191.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0333930_27	1540257.JQMW01000009_gene3375	95.1	3.84e-23	N/A	N/A
Pfam	UHGV-0333930_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0333930_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0333930_27	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0333930_28	UniRef90_A0A6B9SU02	97.1	1.94e-21	Fibronectin autolysin	N/A
structural_annotation	UHGV-0333930_28	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_29	phrog_544	119.7	2.7e-35	major head protein	head and packaging
UniRef90	UHGV-0333930_29	UniRef90_A0A1C6B5R0	334.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0333930_29	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-0333930_29	PF06673,PF13629,MF_04119,TIGR04387,NF005261,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_31	phrog_17977	82.4	3.6e-24	N/A	unknown function
UniRef90	UHGV-0333930_31	UniRef90_A0A285PT57	92.0	1.03e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0333930_31	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0333930_32	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_33	phrog_885	74.8	9.8e-22	major tail protein	tail
UniRef90	UHGV-0333930_33	UniRef90_A0A843J9F0	189.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0333930_33	1504822.CCNO01000012_gene492	219.0	0	N/A	N/A
structural_annotation	UHGV-0333930_33	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_34	phrog_18646	51.7	0.000000000000014	N/A	unknown function
PHROG	UHGV-0333930_36	phrog_1272	355.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0333930_36	UniRef90_A0A6N8JML2	313.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0333930_36	411483.FAEPRAA2165_01911	366.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0333930_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0333930_36	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0333930_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0333930_36	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_37	phrog_33	53.4	0.0000000000000061	distal tail protein Dit	tail
UniRef90	UHGV-0333930_37	UniRef90_UPI001C0FCFFA	254.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0333930_37	1033737.CAEV01000029_gene285	93.2	2.61e-19	Phage tail protein	N/A
COG	UHGV-0333930_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0333930_37	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_38	phrog_538	111.6	7.1e-33	minor tail protein	tail
UniRef90	UHGV-0333930_38	UniRef90_UPI001C113FEF	223.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0333930_38	665956.HMPREF1032_02940	93.6	1.29e-18	N/A	N/A
Pfam	UHGV-0333930_38	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0333930_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_39	phrog_9534	123.2	2.4e-36	head protein	head and packaging
eggNOG-mapper	UHGV-0333930_39	864178.E2ELJ8_9CAUD	94.4	1.49e-18	cell adhesion	N/A
structural_annotation	UHGV-0333930_39	PF21567	N/A	N/A	N/A	N/A
KOfam	UHGV-0333930_41	K24213	65.0	7.4e-19	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0333930_41	phrog_5073	77.9	9e-23	tail fiber protein	tail
Pfam	UHGV-0333930_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0333930_43	K02395	83.1	6e-24	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0333930_43	phrog_7698	161.7	0	endolysin	lysis
UniRef90	UHGV-0333930_43	UniRef90_A0A6N7XI89	238.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	N/A
eggNOG-mapper	UHGV-0333930_43	877414.ATWA01000019_gene2055	233.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0333930_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0333930_43	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0333930_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0333930_43	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0333930_44	97138.C820_00248	62.4	0.0000000000107	N/A	N/A
PHROG	UHGV-0333930_45	phrog_1129	86.8	1.2e-25	holin	lysis
UniRef90	UHGV-0333930_45	UniRef90_A0A1G9U2I2	105.0	1.32e-27	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0333930_45	476272.RUMHYD_03138	88.6	1.05e-21	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0333930_45	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0333930_45	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0333930_46	phrog_3754	89.7	3.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0333930_46	476272.RUMHYD_01764	149.0	8.40779e-45	N/A	N/A
PHROG	UHGV-0333930_47	phrog_21718	105.7	3.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0333930_47	476272.RUMHYD_01768	88.6	2.5e-20	N/A	N/A
PHROG	UHGV-0333930_48	phrog_22984	71.3	5.4e-22	N/A	unknown function
PHROG	UHGV-0333930_49	phrog_16490	150.3	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0333930_49	1226322.HMPREF1545_00076	56.6	0.000000949	N/A	N/A
PHROG	UHGV-0333930_50	phrog_20016	196.4	0	N/A	unknown function
UniRef90	UHGV-0333930_50	UniRef90_A0A285PT46	202.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0333930_50	1226322.HMPREF1545_00077	174.0	0	N/A	N/A
structural_annotation	UHGV-0333930_50	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0333930_51	476272.RUMHYD_01772	50.8	0.00000645	N/A	N/A
structural_annotation	UHGV-0333930_51	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0333930_52	1226322.HMPREF1545_00079	72.8	0.00000000000000359	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0333930	Yes	33,253	51	81	1