vOTU vOTU-123931

vOTU: vOTU-123931

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-123931
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00942 → vGENUS-00845 → vOTU-123931
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1542430
Biosample ID	N/A
Genome length (bp)	29,988 bps
CheckV completeness	63.94% (Medium-quality)
CDS count	39
CDS density	88.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1369	Host agreement	98.54
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	52	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 63.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1542430_2	phrog_8781	134.4	6.7e-40	endolysin	lysis
UniRef90	UHGV-1542430_2	UniRef90_A0A374HXC4	432.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1542430_2	1160721.RBI_II00521	93.2	6.05e-20	hydrolase, family 25	N/A
Pfam	UHGV-1542430_2	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1542430_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1542430_2	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-1542430_3	UniRef90_UPI0009FBEB5A	149.0	6.72623e-44	phage holin family protein	N/A
Pfam	UHGV-1542430_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-1542430_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_4	phrog_134	64.8	9.5e-19	N/A	unknown function
UniRef90	UHGV-1542430_4	UniRef90_UPI00189C704B	91.3	2.4e-23	XkdX family protein	N/A
eggNOG-mapper	UHGV-1542430_4	478749.BRYFOR_07560	55.8	0.000000000319	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1542430_4	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1542430_4	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1542430_4	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_6	phrog_4242	41.4	0.000000000017	tail fiber protein	tail
eggNOG-mapper	UHGV-1542430_6	1410617.JHXH01000006_gene232	85.1	0.0000000000000158	N/A	N/A
structural_annotation	UHGV-1542430_6	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_8	phrog_9680	55.0	4.7e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1542430_8	1160721.RBI_II00526	509.0	0	N/A	N/A
structural_annotation	UHGV-1542430_8	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_9	phrog_1194	83.7	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1542430_9	1160721.RBI_II00527	124.0	3.43e-35	N/A	N/A
structural_annotation	UHGV-1542430_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_10	phrog_1535	115.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1542430_10	1121866.AUGK01000003_gene1437	214.0	0	phage tail tape measure protein	N/A
COG	UHGV-1542430_10	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-1542430_12	UniRef90_A0A374HKD4	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-1542430_12	1123263.AUKY01000015_gene1618	77.4	5.76e-17	N/A	N/A
Pfam	UHGV-1542430_12	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1542430_12	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1542430_13	1294142.CINTURNW_1696	51.2	0.00000342	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1542430_13	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_14	phrog_78	41.9	0.000000000017	tail terminator	connector
structural_annotation	UHGV-1542430_14	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1542430_15	UniRef90_UPI001BBD4500	124.0	4.86e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1542430_15	397290.C810_01411	112.0	7.25e-29	N/A	N/A
eggNOG-mapper	UHGV-1542430_16	1121866.AUGK01000003_gene1432	62.0	0.000000000165	N/A	N/A
UniRef90	UHGV-1542430_17	UniRef90_A0A374HKI7	200.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1542430_17	996306.SSUR61_0983	55.8	0.000000011	N/A	N/A
Pfam	UHGV-1542430_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1542430_17	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_18	phrog_29	157.7	0	major head protein	head and packaging
UniRef90	UHGV-1542430_18	UniRef90_A0A374HKR5	691.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1542430_18	1232453.BAIF02000058_gene1628	258.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1542430_18	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-1542430_18	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1542430_18	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_20	phrog_909	87.0	1.7e-25	major head protein	head and packaging
eggNOG-mapper	UHGV-1542430_20	1536772.R70723_06665	60.8	0.000000000148	N/A	N/A
UniRef90	UHGV-1542430_21	UniRef90_A0A7C7EK05	75.9	0.000000000000114	N/A	N/A
eggNOG-mapper	UHGV-1542430_21	1232453.BAIF02000058_gene1626	101.0	3.71e-24	N/A	N/A
structural_annotation	UHGV-1542430_21	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_22	phrog_2468	91.7	8.4e-29	head morphogenesis	head and packaging
UniRef90	UHGV-1542430_22	UniRef90_A0A374HKG4	434.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1542430_22	649747.HMPREF0083_01681	82.8	3.61e-16	phage Mu protein	N/A
Pfam	UHGV-1542430_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1542430_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1542430_22	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_23	phrog_64	212.1	0	portal protein	head and packaging
UniRef90	UHGV-1542430_23	UniRef90_A0A374HKE8	909.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1542430_23	1121866.AUGK01000003_gene1429	320.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1542430_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1542430_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_25	phrog_38	181.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1542430_25	UniRef90_A0A3D4KYF7	306.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1542430_25	1232453.BAIF02000058_gene1623	277.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1542430_25	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1542430_25	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1542430_25	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1542430_26	K14060	133.5	1.9e-39	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1542430_26	phrog_125	138.0	6.59998e-41	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1542430_26	UniRef90_A0A374HKF2	352.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1542430_26	931276.Cspa_c57140	194.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1542430_26	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1542430_26	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1542430_26	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1542430_27	UniRef90_A0A374HMV1	110.0	5.27e-30	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1542430_27	PF20075,TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_31	phrog_606	56.2	3.6e-16	terminase small subunit	head and packaging
UniRef90	UHGV-1542430_31	UniRef90_UPI001D07B715	125.0	3.84e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1542430_31	1235793.C809_00539	63.2	0.000000000735	N/A	N/A
Pfam	UHGV-1542430_31	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1542430_31	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1542430_33	K02316	114.7	6.8e-34	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1542430_33	phrog_864	263.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1542430_33	UniRef90_A0A374HKH8	1594.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-1542430_33	2754.EH55_09010	182.0	0	Phage plasmid primase P4 family	N/A
PADLOC	UHGV-1542430_33	drt-cluster192	51.4	1e-20	DRT	DRT
Pfam	UHGV-1542430_33	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-1542430_33	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1542430_33	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1542430_33	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1542430_33	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1542430_33	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1542430_33	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1542430_34	246199.CUS_5908	84.7	1.42e-17	N/A	N/A
PHROG	UHGV-1542430_35	phrog_9958	142.7	1.3004e-42	N/A	unknown function
UniRef90	UHGV-1542430_35	UniRef90_UPI00189DF4B7	368.0	0	N/A	N/A
eggNOG-mapper	UHGV-1542430_35	246199.CUS_4486	182.0	0	N/A	N/A
Pfam	UHGV-1542430_35	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1542430_35	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_36	phrog_8684	97.8	7.1e-30	N/A	unknown function
UniRef90	UHGV-1542430_36	UniRef90_A0A374HKH4	257.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1542430_36	397290.C810_01526	97.8	2.18e-24	YopX protein	N/A
Pfam	UHGV-1542430_36	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1542430_36	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1542430_36	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1542430_37	K06909	65.7	8e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1542430_37	phrog_2	103.5	3.5e-30	terminase large subunit	head and packaging
UniRef90	UHGV-1542430_37	UniRef90_W0U9C6	464.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1542430_37	1160721.RBI_II00397	464.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1542430_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1542430_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1542430_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1542430_37	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1542430_38	phrog_22543	48.5	0.00000000000015	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1542430	Yes	29,988	44	64	1