vOTU vOTU-124377

vOTU: vOTU-124377

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-124377
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00581 → vGENUS-00476 → vOTU-124377
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0090959
Biosample ID	N/A
Genome length (bp)	36,942 bps
CheckV completeness	89.48% (Medium-quality)
CDS count	44
CDS density	93.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	282	Host agreement	96.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	48	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0090959_1	PF20622,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_2	phrog_22978	750.1	0	N/A	unknown function
UniRef90	UHGV-0090959_2	UniRef90_A0A1Y4WLF7	814.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0090959_2	1410650.JHWL01000003_gene2814	488.0	0	N/A	N/A
Pfam	UHGV-0090959_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0090959_3	1410650.JHWL01000003_gene2815	81.3	0.000000000000108	N/A	N/A
PHROG	UHGV-0090959_5	phrog_38190	65.9	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0090959_5	411473.RUMCAL_00420	70.5	0.00000000014	nuclear chromosome segregation	N/A
COG	UHGV-0090959_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0090959_7	phrog_511	193.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0090959_7	1410650.JHWL01000003_gene2827	261.0	0	N/A	N/A
structural_annotation	UHGV-0090959_7	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_8	phrog_12105	128.2	3.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0090959_8	1226322.HMPREF1545_03850	87.4	1.71e-20	N/A	N/A
PHROG	UHGV-0090959_9	phrog_15239	45.7	0.000000000001	N/A	unknown function
PHROG	UHGV-0090959_10	phrog_1357	214.0	0	major head protein	head and packaging
UniRef90	UHGV-0090959_10	UniRef90_A0A2V2CFL5	610.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0090959_10	1410650.JHWL01000003_gene2830	273.0	0	N/A	N/A
NCBIFam	UHGV-0090959_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0090959_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_11	phrog_13908	192.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0090959_11	1410650.JHWL01000003_gene2831	119.0	2.69e-28	N/A	N/A
KOfam	UHGV-0090959_12	K07584	43.3	0.0000000000064	N/A	N/A
PHROG	UHGV-0090959_12	phrog_4478	53.7	0.0000000000000025	peptidase	other
UniRef90	UHGV-0090959_12	UniRef90_UPI001A8F44BB	53.9	0.000000413	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0090959_12	521098.Aaci_1816	54.3	0.0000000492	Cysteine protease Prp	N/A
Pfam	UHGV-0090959_12	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0090959_12	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090959_12	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_13	phrog_156	296.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0090959_13	1410650.JHWL01000003_gene2833	521.0	0	N/A	N/A
structural_annotation	UHGV-0090959_13	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0090959_14	K06909	121.0	1.2e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0090959_14	phrog_979	121.6	2.1e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0090959_14	UniRef90_A0A810Q5R0	622.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0090959_14	1410650.JHWL01000003_gene2834	562.0	0	N/A	N/A
Pfam	UHGV-0090959_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0090959_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0090959_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_15	phrog_1206	40.1	0.000000000012	terminase small subunit	head and packaging
KOfam	UHGV-0090959_16	K01160	57.5	4.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0090959_16	phrog_1682	80.4	2.8e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090959_16	UniRef90_A0A174WGH7	124.0	9.17e-34	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0090959_16	1235790.C805_00029	117.0	1.12e-32	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0090959_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0090959_16	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_17	phrog_474	116.4	4e-34	phosphofructokinase	other
UniRef90	UHGV-0090959_17	UniRef90_A0A1Y4SQK6	113.0	5.05e-30	N/A	N/A
eggNOG-mapper	UHGV-0090959_17	665956.HMPREF1032_00639	111.0	4.45e-30	N/A	N/A
Pfam	UHGV-0090959_17	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0090959_17	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_21	phrog_3136	131.5	2.8e-39	N/A	unknown function
UniRef90	UHGV-0090959_21	UniRef90_A0A3D0HBD2	134.0	1.45e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0090959_21	394503.Ccel_3165	63.2	0.000000000341	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0090959_21	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0090959_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0090959_21	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_22	phrog_38832	53.1	0.0000000000000055	N/A	unknown function
eggNOG-mapper	UHGV-0090959_22	665956.HMPREF1032_03087	48.5	0.00000963	N/A	N/A
PHROG	UHGV-0090959_23	phrog_111	163.5	0	DNA methyltransferase	other
UniRef90	UHGV-0090959_23	UniRef90_A0A316S635	223.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0090959_23	1567011.A0A0A7RUD1_9VIRU	190.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0090959_23	oMTase_00015	192.7	0	orphan methyltransferase	RM
Pfam	UHGV-0090959_23	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0090959_23	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_26	phrog_9474	123.2	2.5e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090959_26	UniRef90_A0A1I7FTR4	116.0	4.59e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0090959_26	644966.Tmar_0029	111.0	2.7e-25	HNH endonuclease	N/A
COG	UHGV-0090959_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0090959_27	K03111	142.7	4.1002e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0090959_27	phrog_44	135.4	4.39999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090959_27	UniRef90_A0A1W1YRF9	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0090959_27	1226322.HMPREF1545_04080	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0090959_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0090959_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0090959_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0090959_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0090959_27	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0090959_28	K07455	285.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0090959_28	phrog_148	276.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090959_28	UniRef90_U2SBP2	371.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0090959_28	1226322.HMPREF1545_00015	371.0	0	RecT family	N/A
Pfam	UHGV-0090959_28	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0090959_28	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0090959_28	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0090959_28	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090959_29	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_30	phrog_434	314.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090959_30	UniRef90_UPI000952E6A4	298.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0090959_30	1121344.JHZO01000003_gene985	278.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0090959_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0090959_30	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0090959_30	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0090959_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090959_34	1235835.C814_03153	68.6	0.0000000000000174	N/A	N/A
structural_annotation	UHGV-0090959_34	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0090959_36	1131462.DCF50_p2449	55.1	0.000000714	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0090959_36	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0090959_36	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0090959_38	K22300	69.7	6e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0090959_38	phrog_4	56.1	0.000000000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0090959_38	UniRef90_A0A174LY22	137.0	1.3e-39	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0090959_38	445972.ANACOL_03315	136.0	6.22e-40	N/A	N/A
Pfam	UHGV-0090959_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0090959_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0090959_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0090959_40	K07729	64.6	2.2e-18	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0090959_40	UniRef90_R5AVU4	90.1	1.61e-22	CI-like repressor	N/A
eggNOG-mapper	UHGV-0090959_40	608538.HTH_1322	58.5	0.000000003	PBP superfamily domain	N/A
Pfam	UHGV-0090959_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0090959_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0090959_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0090959_42	phrog_4785	40.5	0.000000000049	N/A	unknown function
Pfam	UHGV-0090959_42	PF09811	N/A	N/A	Essential protein Yae1, N terminal	Yae1_N
KOfam	UHGV-0090959_43	K14059	140.2	2.59997e-41	int; integrase	N/A
PHROG	UHGV-0090959_43	phrog_1	155.2	0	integrase	integration and excision
UniRef90	UHGV-0090959_43	UniRef90_UPI000F051A1D	423.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0090959_43	693746.OBV_43340	407.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0090959_43	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0090959_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0090959_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0090959_43	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0090959	Yes	36,942	60	89	1