vOTU vOTU-124542

vOTU: vOTU-124542

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-124542
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00767 → vGENUS-01576 → vOTU-124542
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0103758
Biosample ID	SAMEA3541471
Genome length (bp)	36,233 bps
CheckV completeness	83.54% (Medium-quality)
CDS count	53
CDS density	91.75%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	25	Host agreement	84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	16	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0103758_1	K14059	180.5	0	int; integrase	N/A
PHROG	UHGV-0103758_1	phrog_1	162.9	0	integrase	integration and excision
UniRef90	UHGV-0103758_1	UniRef90_B0G4D9	701.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0103758_1	411461.DORFOR_01126	701.0	0	Phage integrase family	N/A
Pfam	UHGV-0103758_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0103758_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0103758_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0103758_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103758_2	UniRef90_A0A173VJ11	327.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0103758_2	411461.DORFOR_01127	522.0	0	N/A	N/A
structural_annotation	UHGV-0103758_2	PF11611,PF03843,MF_00791,MF_01959,TIGR03943,NF003465,COG3065,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0103758_3	K23779	41.9	0.00000000002	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0103758_3	UniRef90_B0G4E1	112.0	1.25e-31	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0103758_3	411461.DORFOR_01128	112.0	2.09e-32	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0103758_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0103758_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0103758_5	K18830	80.2	3.5e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0103758_5	phrog_4	60.9	3.5e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0103758_5	UniRef90_UPI0015714871	179.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0103758_5	1235792.C808_00054	122.0	4.22e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0103758_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0103758_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0103758_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_12	phrog_36464	58.8	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0103758_12	411461.DORFOR_01136	157.0	0	N/A	N/A
structural_annotation	UHGV-0103758_12	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_14	phrog_3584	126.7	1.8e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0103758_14	411461.DORFOR_01138	489.0	0	N/A	N/A
structural_annotation	UHGV-0103758_14	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_16	phrog_531	47.4	0.00000000000037	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103758_16	UniRef90_A0A1M6MV17	147.0	1.33964e-42	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0103758_16	411461.DORFOR_01140	294.0	0	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0103758_16	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0103758_16	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0103758_17	K00571	93.5	2.9e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0103758_17	phrog_23224	215.0	0	DNA methyltransferase	other
UniRef90	UHGV-0103758_17	UniRef90_A0A396PTY1	406.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0103758_17	1214217.ALNF01000014_gene1390	326.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0103758_17	MTase_II_00172	51.2	9.7e-28	Type II methyltransferase	RM
Pfam	UHGV-0103758_17	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0103758_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0103758_17	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0103758_18	K03497	130.9	1.5e-38	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0103758_18	phrog_6218	191.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103758_18	UniRef90_B0G4F7	854.0	0	ParB-like protein	N/A
eggNOG-mapper	UHGV-0103758_18	411461.DORFOR_01144	854.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0103758_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0103758_18	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0103758_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0103758_18	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_19	phrog_7566	100.4	9.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0103758_19	411461.DORFOR_01145	256.0	0	N/A	N/A
structural_annotation	UHGV-0103758_20	PF08169,MF_01549,TIGR00405	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_21	phrog_31991	111.0	5.4e-33	N/A	unknown function
PHROG	UHGV-0103758_22	phrog_38110	118.6	1.6e-35	N/A	unknown function
UniRef90	UHGV-0103758_23	UniRef90_A0A8B3AJ48	105.0	6.99e-27	AsnC family protein	N/A
eggNOG-mapper	UHGV-0103758_23	97139.C824_05982	50.1	0.00000496	N/A	N/A
structural_annotation	UHGV-0103758_23	PF00196,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_24	phrog_924	51.7	0.000000000000019	N/A	unknown function
UniRef90	UHGV-0103758_24	UniRef90_UPI0003FFA2C8	149.0	3.08286e-44	N/A	N/A
Pfam	UHGV-0103758_24	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0103758_24	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0103758_25	K07171	77.6	2.3e-22	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0103758_25	phrog_1936	111.6	4.1e-33	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0103758_25	UniRef90_UPI0015711440	181.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0103758_25	411461.DORFOR_01157	384.0	0	N/A	N/A
Pfam	UHGV-0103758_25	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0103758_25	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0103758_25	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_28	phrog_11237	116.4	2.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0103758_28	411461.DORFOR_01161	281.0	0	N/A	N/A
KOfam	UHGV-0103758_29	K06909	448.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0103758_29	phrog_2606	334.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0103758_29	UniRef90_B0G4H5	1324.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0103758_29	411461.DORFOR_01162	1324.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0103758_29	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0103758_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0103758_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0103758_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0103758_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0103758_29	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_30	phrog_533	331.1	0	portal protein	head and packaging
UniRef90	UHGV-0103758_30	UniRef90_B0G4H6	897.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0103758_30	411461.DORFOR_01163	897.0	0	N/A	N/A
structural_annotation	UHGV-0103758_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_31	phrog_581	285.0	0	minor head protein	head and packaging
UniRef90	UHGV-0103758_31	UniRef90_A0A173RCB2	854.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0103758_31	411461.DORFOR_01164	1143.0	0	N/A	N/A
Pfam	UHGV-0103758_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0103758_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103758_31	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_32	phrog_194	96.3	3.9e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0103758_32	UniRef90_A0A173RCF7	234.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0103758_32	411461.DORFOR_01166	378.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0103758_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0103758_32	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_33	phrog_283	196.2	0	major head protein	head and packaging
UniRef90	UHGV-0103758_33	UniRef90_A0A173REC9	551.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0103758_33	411461.DORFOR_01167	644.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0103758_33	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0103758_33	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_34	phrog_541	79.6	3.7e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0103758_34	411902.CLOBOL_00133	67.8	0.000000000000769	N/A	N/A
PHROG	UHGV-0103758_35	phrog_3366	91.8	7.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0103758_35	742765.HMPREF9457_02129	60.5	0.00000000104	N/A	N/A
Pfam	UHGV-0103758_35	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0103758_35	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_36	phrog_556	61.3	1.4e-17	minor head protein	head and packaging
UniRef90	UHGV-0103758_36	UniRef90_UPI001E609FF9	218.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0103758_36	411461.DORFOR_01170	283.0	0	Minor capsid protein	N/A
Pfam	UHGV-0103758_36	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0103758_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_37	phrog_3266	77.6	1.5e-22	tail completion	connector
structural_annotation	UHGV-0103758_37	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_38	phrog_820	100.5	1.4e-29	major tail protein	tail
UniRef90	UHGV-0103758_38	UniRef90_A0A412UWV6	251.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0103758_38	411461.DORFOR_01172	337.0	0	N/A	N/A
structural_annotation	UHGV-0103758_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_39	phrog_4450	59.3	8e-17	N/A	unknown function
UniRef90	UHGV-0103758_39	UniRef90_A0A7X3SKC0	101.0	1.99e-25	AP endonuclease	N/A
eggNOG-mapper	UHGV-0103758_39	931276.Cspa_c07520	55.5	0.0000000279	N/A	N/A
Pfam	UHGV-0103758_39	PF20378	N/A	N/A	N/A	DUF6673
PHROG	UHGV-0103758_40	phrog_706	164.4	0	N/A	unknown function
UniRef90	UHGV-0103758_40	UniRef90_B0G4I7	379.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0103758_40	411461.DORFOR_01174	379.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0103758_40	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0103758_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_41	phrog_19074	475.1	0	N/A	unknown function
UniRef90	UHGV-0103758_41	UniRef90_A0A413QNB2	1843.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0103758_41	411461.DORFOR_01175	1890.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0103758_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0103758_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0103758_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0103758_41	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_42	phrog_33	46.0	0.0000000000013	distal tail protein Dit	tail
UniRef90	UHGV-0103758_42	UniRef90_UPI0015709E93	285.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0103758_42	411461.DORFOR_01176	562.0	0	N/A	N/A
structural_annotation	UHGV-0103758_42	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_43	phrog_538	196.0	0	minor tail protein	tail
UniRef90	UHGV-0103758_43	UniRef90_UPI001E2C8064	315.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0103758_43	411461.DORFOR_01177	669.0	0	N/A	N/A
structural_annotation	UHGV-0103758_43	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_44	phrog_13141	150.4	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0103758_44	UniRef90_UPI001570499E	253.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0103758_44	411461.DORFOR_01178	346.0	0	N/A	N/A
structural_annotation	UHGV-0103758_44	PF20747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103758_45	411460.RUMTOR_01324	57.0	0.0000000803	N/A	N/A
structural_annotation	UHGV-0103758_46	PF16323	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_48	phrog_17147	330.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0103758_48	657322.FPR_27150	556.0	0	N/A	N/A
KOfam	UHGV-0103758_49	K00986	72.6	5.6e-21	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0103758_49	phrog_1423	132.0	5.3e-39	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103758_49	UniRef90_A0A395V130	802.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0103758_49	657322.FPR_27160	388.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-0103758_49	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0103758_49	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0103758_49	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0103758_51	phrog_28526	122.4	1.1e-36	N/A	unknown function
UniRef90	UHGV-0103758_51	UniRef90_A0A415D4T1	96.7	1.75e-25	N/A	N/A
eggNOG-mapper	UHGV-0103758_51	411462.DORLON_00769	94.7	1.71e-25	N/A	N/A
PHROG	UHGV-0103758_52	phrog_1009	41.0	0.00000000003	N/A	unknown function
UniRef90	UHGV-0103758_52	UniRef90_A0A173RD60	172.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0103758_52	742765.HMPREF9457_03364	182.0	0	N/A	N/A
PHROG	UHGV-0103758_53	phrog_1129	76.5	2.4e-22	holin	lysis
UniRef90	UHGV-0103758_53	UniRef90_UPI001F15FE24	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0103758_53	411461.DORFOR_00721	178.0	0	N/A	N/A
Pfam	UHGV-0103758_53	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0103758_53	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0103758	Yes	36,233	43	84	1