vOTU vOTU-125101

vOTU: vOTU-125101

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-125101
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00114 → vOTU-125101
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0174280
Biosample ID	SAMN07501205
Genome length (bp)	32,220 bps
CheckV completeness	74.05% (Medium-quality)
CDS count	42
CDS density	90.24%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium piotii	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii	Total connections	11	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0174280_1	K02051	67.2	3.3e-19	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	N/A
PHROG	UHGV-0174280_1	phrog_28844	189.6	0	N/A	unknown function
UniRef90	UHGV-0174280_1	UniRef90_T4VT53	258.0	0	Putative aBC transporter substrate-binding protein	N/A
eggNOG-mapper	UHGV-0174280_1	1292035.H476_1042	298.0	0	ABC-type nitrate sulfonate bicarbonate transport	N/A
COG	UHGV-0174280_1	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A
KOfam	UHGV-0174280_2	K06400	293.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0174280_2	phrog_95	315.7	0	integrase	integration and excision
UniRef90	UHGV-0174280_2	UniRef90_A0A0M1V0J5	967.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-0174280_2	1292035.H476_1041	967.0	0	resolvase	N/A
Pfam	UHGV-0174280_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0174280_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0174280_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0174280_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0174280_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174280_3	1408311.JNJM01000003_gene2963	65.1	0.000000000321	N/A	N/A
structural_annotation	UHGV-0174280_3	PF21577,MF_00791,TIGR04209,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_4	phrog_87	72.5	4.6e-21	metallo-protease	other
UniRef90	UHGV-0174280_4	UniRef90_A0A0M1V0B0	289.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0174280_4	1292035.H476_1038	289.0	0	N/A	N/A
Pfam	UHGV-0174280_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0174280_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0174280_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_5	K22300	56.3	7.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0174280_5	phrog_8	57.9	2.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174280_5	UniRef90_UPI0005E64CA6	313.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0174280_5	1292035.H476_1037	196.0	0	sequence-specific DNA binding	N/A
Pfam	UHGV-0174280_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174280_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0174280_5	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174280_6	UniRef90_UPI001897F865	125.0	1.21e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_6	796940.HMPREF9628_01560	55.1	0.00000000227	N/A	N/A
Pfam	UHGV-0174280_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0174280_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_7	K07741	211.8	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0174280_7	phrog_63	174.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0174280_7	UniRef90_UPI00070EAF41	459.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_7	1035196.HMPREF9998_01733	291.0	0	N/A	N/A
Pfam	UHGV-0174280_7	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0174280_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0174280_7	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0174280_7	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174280_9	UniRef90_UPI0005E5522E	120.0	1.78e-34	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0174280_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174280_9	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0174280_9	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_12	phrog_434	358.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174280_12	UniRef90_A0A446I8H9	602.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_12	1292035.H476_1032	627.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0174280_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0174280_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0174280_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0174280_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_13	K07455	310.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0174280_13	phrog_148	295.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174280_13	UniRef90_A0A0C7QU00	518.0	0	Protein RecT	N/A
eggNOG-mapper	UHGV-0174280_13	1292035.H476_1031	526.0	0	RecT family	N/A
Pfam	UHGV-0174280_13	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0174280_13	NF007351.0	N/A	N/A	recombination protein RecT	N/A
COG	UHGV-0174280_13	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0174280_13	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_14	phrog_6251	300.8	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174280_14	UniRef90_UPI00164DD6A2	352.0	0	replication protein	N/A
eggNOG-mapper	UHGV-0174280_14	272563.CD630_09180	278.0	0	DnaD domain protein	N/A
COG	UHGV-0174280_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0174280_14	PF09681,TIGR01714,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174280_15	UniRef90_T0D5R2	61.6	0.00000000235	NUMOD1 domain protein	N/A
PHROG	UHGV-0174280_16	phrog_173	63.4	4.4e-18	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174280_16	UniRef90_UPI001655D9F6	300.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0174280_16	1117379.BABA_21846	54.3	0.000000738	dUTPase	N/A
Pfam	UHGV-0174280_16	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0174280_16	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0174280_16	PF08761,COG4508	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174280_18	1292035.H476_1026	201.0	0	N/A	N/A
structural_annotation	UHGV-0174280_18	PF08948,MF_01537,TIGR03711	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_19	K01160	51.6	0.000000000000027	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0174280_19	phrog_140	138.2	3.89995e-41	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174280_19	UniRef90_UPI0005DBBC35	257.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0174280_19	1292035.H476_1025	263.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0174280_19	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0174280_19	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0174280_19	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_20	K06284	91.5	8e-27	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0174280_20	phrog_4681	82.7	2.5e-24	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0174280_20	UniRef90_A0A0A8WIS8	175.0	0	SpoVT-AbrB domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_20	1292035.H476_1024	175.0	0	PFAM Transcription regulator AbrB SpoV	N/A
Pfam	UHGV-0174280_20	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0174280_20	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0174280_20	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0174280_20	PF04014,TIGR01439,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_21	phrog_36	76.1	5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174280_21	UniRef90_A0A0A8WDC9	324.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0174280_21	1292035.H476_1023	324.0	0	sigma factor activity	N/A
COG	UHGV-0174280_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0174280_21	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_22	phrog_3220	114.6	3.3e-34	N/A	unknown function
UniRef90	UHGV-0174280_22	UniRef90_UPI0005DD0BA7	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0174280_22	397291.C804_06285	126.0	1.99e-37	N/A	N/A
Pfam	UHGV-0174280_22	PF09954	N/A	N/A	N/A	DUF2188
structural_annotation	UHGV-0174280_22	PF09954	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_23	phrog_15714	88.4	1.8e-26	N/A	unknown function
UniRef90	UHGV-0174280_23	UniRef90_UPI000C338C6A	169.0	0	SEC-C domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_23	1160707.AJIK01000028_gene1587	142.0	3.6e-37	N/A	N/A
eggNOG-mapper	UHGV-0174280_24	1121931.AUHG01000004_gene924	96.3	7.75e-22	N/A	N/A
PHROG	UHGV-0174280_25	phrog_509	311.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0174280_25	UniRef90_UPI0005E44902	436.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0174280_25	1292035.H476_1020	402.0	0	DNA packaging	N/A
Pfam	UHGV-0174280_25	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0174280_25	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0174280_25	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174280_25	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0174280_26	K06909	73.7	2.2e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0174280_26	phrog_2	85.0	1.4e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0174280_26	UniRef90_A0A0M1V0L9	897.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_26	1292035.H476_1019	897.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0174280_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0174280_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0174280_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0174280_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_27	phrog_533	392.1	0	portal protein	head and packaging
UniRef90	UHGV-0174280_27	UniRef90_A0A848BG51	830.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0174280_27	1292035.H476_1018	889.0	0	N/A	N/A
Pfam	UHGV-0174280_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0174280_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_28	phrog_581	353.9	0	minor head protein	head and packaging
UniRef90	UHGV-0174280_28	UniRef90_UPI0005E2F04E	1097.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0174280_28	1292035.H476_1017	777.0	0	N/A	N/A
Pfam	UHGV-0174280_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0174280_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174280_28	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_30	phrog_194	172.1	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0174280_30	UniRef90_UPI0005E2BC6E	242.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0174280_30	1292035.H476_1015	256.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0174280_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0174280_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_31	phrog_247	322.9	0	major head protein	head and packaging
UniRef90	UHGV-0174280_31	UniRef90_A0A6M1WIR1	553.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0174280_31	1292035.H476_1014	722.0	0	N/A	N/A
COG	UHGV-0174280_31	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0174280_31	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_32	phrog_541	83.4	2.1e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0174280_32	536233.CLO_0887	71.2	0.0000000000000205	N/A	N/A
PHROG	UHGV-0174280_33	phrog_3366	145.5	2.00386e-43	N/A	unknown function
eggNOG-mapper	UHGV-0174280_33	1151292.QEW_4533	132.0	1.44e-37	N/A	N/A
Pfam	UHGV-0174280_33	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0174280_33	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_34	phrog_556	91.4	7.7e-27	minor head protein	head and packaging
UniRef90	UHGV-0174280_34	UniRef90_A0A848BIW5	196.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0174280_34	1292035.H476_1011	234.0	0	Minor capsid protein	N/A
Pfam	UHGV-0174280_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0174280_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_35	phrog_3266	186.1	0	tail completion	connector
UniRef90	UHGV-0174280_35	UniRef90_A0A848BCA5	257.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0174280_35	1292035.H476_1010	279.0	0	N/A	N/A
structural_annotation	UHGV-0174280_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_36	phrog_3099	199.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0174280_36	1292035.H476_1009	306.0	0	N/A	N/A
structural_annotation	UHGV-0174280_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_37	phrog_4450	115.1	3.8e-34	N/A	unknown function
UniRef90	UHGV-0174280_37	UniRef90_UPI0018AB083C	72.4	0.000000000000147	AP endonuclease	N/A
eggNOG-mapper	UHGV-0174280_37	931276.Cspa_c07520	57.4	0.000000009	N/A	N/A
Pfam	UHGV-0174280_37	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0174280_37	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_38	phrog_706	185.4	0	N/A	unknown function
UniRef90	UHGV-0174280_38	UniRef90_UPI001A8DB6F6	234.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0174280_38	1292035.H476_1007	396.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0174280_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0174280_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_39	phrog_1272	149.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0174280_39	UniRef90_A0A0M1V0W6	1299.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0174280_39	1292035.H476_1006	1299.0	0	tape measure	N/A
Pfam	UHGV-0174280_39	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0174280_39	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0174280_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0174280_39	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174280_40	UniRef90_A0A0M1V0M8	443.0	0	Conserved phage-related protein	N/A
eggNOG-mapper	UHGV-0174280_40	1292035.H476_1005	486.0	0	tail component	N/A
COG	UHGV-0174280_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0174280_40	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0174280_41	phrog_7043	454.0	0	tail protein	tail
UniRef90	UHGV-0174280_41	UniRef90_A0A0M1V0N5	1590.0	0	Phage minor structural, N-terminal regiondomainprotein	N/A
eggNOG-mapper	UHGV-0174280_41	1292035.H476_1004	1590.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0174280_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0174280_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0174280_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0174280_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0174280	Yes	32,220	28	74	1