vOTU vOTU-125147

vOTU: vOTU-125147

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-125147
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00090 → vGENUS-00069 → vOTU-125147
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1485534
Biosample ID	SAMEA2467034
Genome length (bp)	36,766 bps
CheckV completeness	61.22% (Medium-quality)
CDS count	52
CDS density	90.00%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia	Total connections	226	Host agreement	82.3
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	113	Host agreement	69.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1485534_1	K02314	111.1	1.1e-32	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1485534_1	phrog_19	111.0	1.2e-32	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485534_1	UniRef90_A0A7V0JET6	80.9	0.0000000000000156	DNA helicase (Fragment)	N/A
eggNOG-mapper	UHGV-1485534_1	1298920.KI911353_gene2061	165.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1485534_1	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1485534_1	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1485534_1	COG0305	N/A	N/A	Replicative DNA helicase	N/A
PHROG	UHGV-1485534_2	phrog_5968	157.6	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485534_2	UniRef90_A0A413Z5U5	477.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_2	908338.HMPREF9286_0278	157.0	3.22299e-44	Phage replisome organizer N-terminal domain protein	N/A
Pfam	UHGV-1485534_2	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1485534_2	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1485534_2	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_3	phrog_3490	143.8	8.50588e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485534_3	UniRef90_A0A1Q9J756	317.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_3	1232453.BAIF02000057_gene1143	227.0	0	N/A	N/A
Pfam	UHGV-1485534_3	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1485534_3	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1485534_5	K06167	51.0	0.0000000000000043	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1485534_5	phrog_392	175.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-1485534_5	UniRef90_A0A1Q6KA45	414.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_5	1443122.Z958_05735	169.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1485534_5	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1485534_5	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1485534_5	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1485534_7	K06940	49.3	0.000000000000099	N/A	N/A
PHROG	UHGV-1485534_7	phrog_32498	219.3	0	N/A	unknown function
UniRef90	UHGV-1485534_7	UniRef90_A0A3R6ASD4	248.0	0	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-1485534_7	397290.C810_01479	155.0	0	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-1485534_7	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
structural_annotation	UHGV-1485534_7	PF03692	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_8	phrog_25456	84.3	1.2e-24	N/A	unknown function
PHROG	UHGV-1485534_9	phrog_561	181.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485534_9	UniRef90_UPI001904C527	195.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1485534_9	537013.CLOSTMETH_01715	212.0	0	N/A	N/A
Pfam	UHGV-1485534_9	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1485534_9	NF007351,COG3723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485534_11	1232453.BAIF02000057_gene1135	66.6	0.00000000000479	N/A	N/A
PHROG	UHGV-1485534_12	phrog_4433	273.9	0	N/A	unknown function
UniRef90	UHGV-1485534_12	UniRef90_A0A1V5NWB8	89.4	3.49e-17	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1485534_12	665950.HMPREF1025_01373	193.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1485534_12	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-1485534_13	K19171	102.8	2.8e-30	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1485534_13	phrog_77	253.1	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485534_13	UniRef90_UPI001D02FD96	1133.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1485534_13	1294142.CINTURNW_1008	312.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1485534_13	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
COG	UHGV-1485534_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1485534_13	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-1485534_15	K03111	47.4	0.00000000000021	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1485534_15	phrog_26861	120.9	7.5e-36	N/A	unknown function
UniRef90	UHGV-1485534_15	UniRef90_A0A3R6HE90	392.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1485534_15	1256908.HMPREF0373_01719	248.0	0	N/A	N/A
Pfam	UHGV-1485534_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1485534_15	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1485534_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1485534_15	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1485534_17	K07741	57.6	4.7e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-1485534_17	phrog_373	136.5	1.90001e-40	anti-repressor	transcription regulation
UniRef90	UHGV-1485534_17	UniRef90_A0A1Q9J883	477.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-1485534_17	552396.HMPREF0863_00756	209.0	0	P22_AR N-terminal domain	N/A
Pfam	UHGV-1485534_17	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1485534_17	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1485534_17	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485534_20	UniRef90_A0A1Q6KAH5	138.0	1.81006e-41	N/A	N/A
eggNOG-mapper	UHGV-1485534_20	1121335.Clst_0370	92.8	2.94e-24	N/A	N/A
structural_annotation	UHGV-1485534_20	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1485534_21	K22300	63.1	5.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1485534_21	phrog_8	79.7	4.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485534_21	UniRef90_A0A1Q6KAD1	228.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_21	1235790.C805_00362	91.3	5.99e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1485534_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1485534_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1485534_21	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_23	phrog_17196	139.6	0	kinase	other
UniRef90	UHGV-1485534_23	UniRef90_D4L3U0	518.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_23	1235790.C805_00090	192.0	0	N/A	N/A
PHROG	UHGV-1485534_25	phrog_18190	596.6	0	N/A	unknown function
UniRef90	UHGV-1485534_25	UniRef90_A0A413Z640	1355.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_25	397290.C810_01435	442.0	0	N/A	N/A
Pfam	UHGV-1485534_25	PF07902	N/A	N/A	gp58-like protein	Gp58
Pfam	UHGV-1485534_25	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1485534_25	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_26	phrog_1194	63.3	3.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1485534_26	483218.BACPEC_01144	69.7	0.000000000000258	N/A	N/A
Pfam	UHGV-1485534_26	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1485534_26	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_28	phrog_373	87.8	1.1e-25	anti-repressor	transcription regulation
UniRef90	UHGV-1485534_28	UniRef90_UPI00067F36E0	316.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485534_28	1347392.CCEZ01000060_gene3299	117.0	2.19e-29	Phage regulatory protein	N/A
Pfam	UHGV-1485534_28	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-1485534_28	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1485534_28	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485534_30	UniRef90_A0A1Q6KJY9	353.0	0	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485534_30	742740.HMPREF9474_01531	59.3	0.0000000113	zinc-ribbon domain	N/A
Pfam	UHGV-1485534_30	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1485534_30	PF02701,NF041869	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_31	phrog_1535	154.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1485534_31	UniRef90_A0A173UHS1	292.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1485534_31	397290.C810_01419	249.0	0	Transglycosylase SLT domain	N/A
COG	UHGV-1485534_31	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-1485534_31	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_32	phrog_14030	123.5	1.3e-36	N/A	unknown function
UniRef90	UHGV-1485534_32	UniRef90_A0A3R6ARM6	516.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1485534_32	1235793.C809_02691	174.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1485534_32	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1485534_32	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1485534_32	PF01471,NF038080,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485534_35	476272.RUMHYD_01968	192.0	0	N/A	N/A
structural_annotation	UHGV-1485534_35	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485534_36	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_37	phrog_5	40.6	0.000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-1485534_37	UniRef90_UPI001BBD4500	167.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1485534_37	397290.C810_01411	210.0	0	N/A	N/A
structural_annotation	UHGV-1485534_37	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485534_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_39	phrog_18218	138.3	2.09999e-41	N/A	unknown function
UniRef90	UHGV-1485534_39	UniRef90_A0A8D9PGR5	178.0	0	Holin	N/A
eggNOG-mapper	UHGV-1485534_39	411902.CLOBOL_03424	80.1	4.9e-18	N/A	N/A
structural_annotation	UHGV-1485534_39	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_40	phrog_1863	52.5	0.0000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-1485534_40	1232452.BAIB02000007_gene1606	68.2	0.000000000000259	N/A	N/A
eggNOG-mapper	UHGV-1485534_41	397290.C810_01402	66.2	0.00000000000229	N/A	N/A
UniRef90	UHGV-1485534_42	UniRef90_A0A416G2T8	73.6	0.00000000000000179	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1485534_42	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_43	phrog_29	160.1	0	major head protein	head and packaging
UniRef90	UHGV-1485534_43	UniRef90_A0A173UF26	636.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1485534_43	1118054.CAGW01000102_gene4700	168.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1485534_43	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1485534_43	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_44	phrog_909	79.1	4.6e-23	major head protein	head and packaging
UniRef90	UHGV-1485534_44	UniRef90_R7BGI8	169.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1485534_44	268407.PWYN_15680	49.7	0.00000446	N/A	N/A
UniRef90	UHGV-1485534_45	UniRef90_R6C0B6	137.0	1.37e-37	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1485534_46	phrog_64	175.6	0	portal protein	head and packaging
UniRef90	UHGV-1485534_46	UniRef90_A0A3R6ASF4	941.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1485534_46	1298920.KI911353_gene2663	455.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1485534_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1485534_46	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_47	phrog_36	63.0	5.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485534_47	UniRef90_A0A352SH29	139.0	1.82001e-40	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-1485534_47	97138.C820_00221	75.9	0.00000000000000149	sigma factor activity	N/A
COG	UHGV-1485534_47	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1485534_47	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_48	phrog_38	136.6	1.8e-40	terminase large subunit	head and packaging
UniRef90	UHGV-1485534_48	UniRef90_A0A318EQM2	359.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1485534_48	1123263.AUKY01000015_gene1608	331.0	0	chromosome segregation	N/A
COG	UHGV-1485534_48	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485534_48	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1485534_49	phrog_25639	51.9	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1485534_49	397290.C810_01381	52.0	0.0000000627	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1485534	Yes	36,766	40	61	1