vOTU vOTU-125504

vOTU: vOTU-125504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-125504
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vOTU-125504
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1378417
Biosample ID	N/A
Genome length (bp)	22,013 bps
CheckV completeness	52.14% (Medium-quality)
CDS count	43
CDS density	86.16%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	367	Host agreement	97.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	8	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1378417_2	1384065.JAGS01000001_gene3265	48.5	0.00000358	sequence-specific DNA binding	N/A
COG	UHGV-1378417_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1378417_2	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_4	phrog_3754	99.1	3.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1378417_4	1235790.C805_00054	112.0	2.27e-30	N/A	N/A
PHROG	UHGV-1378417_5	phrog_21718	89.2	4.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1378417_5	397290.C810_05210	80.1	8.62e-17	N/A	N/A
PHROG	UHGV-1378417_6	phrog_22984	69.2	5.6e-20	N/A	unknown function
PHROG	UHGV-1378417_7	phrog_16490	198.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1378417_7	397290.C810_01328	134.0	1.66e-34	N/A	N/A
PHROG	UHGV-1378417_8	phrog_20016	197.6	0	N/A	unknown function
UniRef90	UHGV-1378417_8	UniRef90_A0A285PT46	210.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1378417_8	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-1378417_8	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378417_9	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1378417_11	K14059	140.4	2.09999e-41	int; integrase	N/A
PHROG	UHGV-1378417_11	phrog_1	162.0	0	integrase	integration and excision
UniRef90	UHGV-1378417_11	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1378417_11	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1378417_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1378417_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1378417_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1378417_12	K15773	41.3	0.000000000028	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-1378417_12	UniRef90_A0A6N7TLT0	378.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1378417_12	266265.Bxe_A3948	50.8	0.00000354	Helix-turn-helix domain	N/A
Pfam	UHGV-1378417_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1378417_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1378417_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_15	phrog_888	116.1	3.2e-35	N/A	unknown function
UniRef90	UHGV-1378417_15	UniRef90_A0A6N7TMA2	433.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1378417_15	1415774.U728_165	85.5	4.22e-17	Short C-terminal domain	N/A
Pfam	UHGV-1378417_15	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1378417_15	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1378417_15	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1378417_18	K22300	50.0	0.00000000000006	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1378417_18	phrog_2967	46.7	0.0000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-1378417_18	UniRef90_A0A844DFR0	169.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1378417_18	748224.HMPREF9436_01444	140.0	5.38995e-41	N/A	N/A
Pfam	UHGV-1378417_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1378417_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1378417_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-1378417_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1378417_24	K07741	88.3	2e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-1378417_24	phrog_5817	91.3	1.2e-26	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1378417_24	UniRef90_A0A4Z0Y6Y0	162.0	5.60519e-45	AntA/AntB antirepressor	N/A
eggNOG-mapper	UHGV-1378417_24	903814.ELI_3141	130.0	1.46e-33	AntA/AntB antirepressor	N/A
Pfam	UHGV-1378417_24	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1378417_24	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1378417_24	PF02498,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378417_27	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378417_28	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378417_29	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378417_30	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_31	phrog_674	151.4	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1378417_31	UniRef90_A0A3A6E846	500.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378417_31	556268.OFAG_00840	83.6	9.6e-16	N/A	N/A
Pfam	UHGV-1378417_31	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1378417_31	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_32	phrog_2760	179.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378417_32	UniRef90_A0A3A6EAW6	533.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1378417_32	1235794.C811_01355	152.0	1.23006e-41	RecT family	N/A
Pfam	UHGV-1378417_32	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1378417_32	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1378417_32	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1378417_32	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378417_33	UniRef90_UPI001CBB85F6	116.0	1.5e-29	single-stranded DNA-binding protein	N/A
COG	UHGV-1378417_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1378417_33	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_34	phrog_15768	126.1	2.9e-37	N/A	unknown function
UniRef90	UHGV-1378417_34	UniRef90_A0A844D5V0	206.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1378417_34	748224.HMPREF9436_03357	140.0	5.05e-38	N/A	N/A
Pfam	UHGV-1378417_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1378417_35	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_38	phrog_757	187.8	0	DNA methyltransferase	other
UniRef90	UHGV-1378417_38	UniRef90_A0A355KVL2	367.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1378417_38	748224.HMPREF9436_03069	411.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1378417_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1378417_38	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_39	phrog_3136	127.7	4.2e-38	N/A	unknown function
UniRef90	UHGV-1378417_39	UniRef90_UPI001CBCD733	140.0	3.07e-39	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1378417_39	97139.C824_00742	67.8	0.00000000000555	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1378417_39	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1378417_39	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1378417_39	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1378417_40	K03700	90.6	2.2e-26	recU; recombination protein U	N/A
PHROG	UHGV-1378417_40	phrog_843	161.1	0	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378417_40	UniRef90_A0A1C5P0D5	343.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1378417_40	748224.HMPREF9436_03347	347.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1378417_40	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1378417_40	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-1378417_40	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_41	phrog_36	57.1	3.3e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1378417_41	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1378417_42	phrog_606	88.9	5.3e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1378417_42	UniRef90_UPI001C02EFD1	331.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1378417_42	397290.C810_05185	142.0	1.84999e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-1378417_42	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1378417_42	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1378417_43	K06909	64.1	2.2e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1378417_43	phrog_2	106.7	3.7e-31	terminase large subunit	head and packaging
UniRef90	UHGV-1378417_43	UniRef90_A0A844D8I4	451.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1378417_43	1120746.CCNL01000014_gene2093	311.0	0	DNA packaging	N/A
Pfam	UHGV-1378417_43	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1378417_43	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1378417_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1378417_43	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1378417	Yes	22,013	54	52	1
UHGV-0133353	No	22,013	54	52	1