vOTU vOTU-125551

vOTU: vOTU-125551

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-125551
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00346 → vGENUS-00244 → vOTU-125551
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032090
Biosample ID	SAMEA4765760
Genome length (bp)	20,391 bps
CheckV completeness	52.48% (Medium-quality)
CDS count	30
CDS density	94.59%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	10	Host agreement	50
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032090_2	phrog_27545	121.7	4.5e-36	N/A	unknown function
UniRef90	UHGV-0032090_2	UniRef90_A0A2V2GQB6	260.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032090_2	411471.SUBVAR_06976	137.0	9.07e-40	N/A	N/A
Pfam	UHGV-0032090_2	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0032090_4	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
KOfam	UHGV-0032090_5	K20285	65.2	7.4e-19	RABEPK; Rab9 effector protein with kelch motifs	N/A
Pfam	UHGV-0032090_5	PF01344	N/A	N/A	Kelch motif	Kelch_1
Pfam	UHGV-0032090_5	PF13964	N/A	N/A	Kelch motif	Kelch_6
structural_annotation	UHGV-0032090_5	PF16472,MF_01195,TIGR03548,COG3055	N/A	N/A	N/A	N/A
KOfam	UHGV-0032090_6	K19719	245.6	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0032090_6	phrog_819	151.6	0	tail protein	tail
UniRef90	UHGV-0032090_6	UniRef90_A0A8D9PE13	705.0	0	Virion structural protein	N/A
eggNOG-mapper	UHGV-0032090_6	33035.JPJF01000033_gene2261	58.9	0.00000576	tail collar domain protein	N/A
Pfam	UHGV-0032090_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0032090_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0032090_7	phrog_3287	136.5	1.50001e-40	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0032090_7	665956.HMPREF1032_03917	480.0	0	N/A	N/A
structural_annotation	UHGV-0032090_7	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0032090_10	phrog_1357	246.5	0	major head protein	head and packaging
UniRef90	UHGV-0032090_10	UniRef90_A0A8D9UHB3	573.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0032090_10	696281.Desru_1092	290.0	0	N/A	N/A
Pfam	UHGV-0032090_10	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0032090_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0032090_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032090_11	UniRef90_A0A8D9UHB9	327.0	0	Non-structural protein 5	N/A
UniRef90	UHGV-0032090_12	UniRef90_A0A8D9UHD6	125.0	9.92e-37	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0032090_12	PF20020	N/A	N/A	N/A	N/A
PHROG	UHGV-0032090_13	phrog_156	178.7	0	portal protein	head and packaging
UniRef90	UHGV-0032090_13	UniRef90_A0A8D9UHD1	971.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0032090_13	1121091.AUMP01000003_gene2583	370.0	0	N/A	N/A
structural_annotation	UHGV-0032090_13	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0032090_15	K06909	152.3	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032090_15	phrog_979	158.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032090_15	UniRef90_A0A8D9UH35	792.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0032090_15	1232449.BAHV02000016_gene1824	471.0	0	N/A	N/A
Pfam	UHGV-0032090_15	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0032090_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032090_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032090_16	UniRef90_A0A8D9UHF6	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032090_16	1054213.HMPREF9946_03131	60.5	0.000000000169	N/A	N/A
Pfam	UHGV-0032090_16	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-0032090_17	phrog_7339	97.3	1.3e-28	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032090_17	UniRef90_A0A2V2GLL9	512.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032090_17	1150474.JQJI01000006_gene784	92.0	2.57e-19	metallophosphoesterase	N/A
Pfam	UHGV-0032090_17	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0032090_17	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0032090_17	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-0032090_19	phrog_36	41.9	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032090_19	UniRef90_UPI001D0837DD	115.0	3.54e-30	N/A	N/A
eggNOG-mapper	UHGV-0032090_19	428125.CLOLEP_01806	89.4	1.35e-20	N/A	N/A
structural_annotation	UHGV-0032090_19	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032090_20	657322.FPR_23450	152.0	0	N/A	N/A
structural_annotation	UHGV-0032090_25	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0032090_27	K01160	69.3	9.3e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0032090_27	phrog_34	70.7	2.1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032090_27	UniRef90_A0A498CNH4	141.0	2.50006e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0032090_27	1226322.HMPREF1545_04070	54.7	0.0000000942	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0032090_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0032090_27	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0032090_28	phrog_111	159.0	0	DNA methyltransferase	other
UniRef90	UHGV-0032090_28	UniRef90_A0A0J0YT24	209.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0032090_28	1450694.BTS2_0497	202.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0032090_28	oMTase_00015	185.1	0	orphan methyltransferase	RM
Pfam	UHGV-0032090_28	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0032090_28	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0032090_29	phrog_16304	90.2	2.4e-26	N/A	unknown function
UniRef90	UHGV-0032090_29	UniRef90_UPI001E560709	381.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032090_29	290402.Cbei_3733	62.8	0.00000000553	DnaD domain protein	N/A
Pfam	UHGV-0032090_29	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0032090_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0032090_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0032090_30	K03111	128.8	6.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032090_30	phrog_44	134.1	9.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032090_30	UniRef90_UPI001E2A5A6F	241.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032090_30	1499683.CCFF01000014_gene3925	124.0	1.27e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0032090_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032090_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032090_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032090_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032090_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032090	Yes	20,391	52	52	1