vOTU vOTU-126059

vOTU: vOTU-126059

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-126059
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-03695 → vOTU-126059
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0059727
Biosample ID	SAMEA2466955
Genome length (bp)	27,748 bps
CheckV completeness	55.73% (Medium-quality)
CDS count	54
CDS density	92.70%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium	Total connections	25	Host agreement	72
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium	Total connections	37	Host agreement	97.3

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0059727_1	K14059	304.8	0	int; integrase	N/A
PHROG	UHGV-0059727_1	phrog_1	262.2	0	integrase	integration and excision
UniRef90	UHGV-0059727_1	UniRef90_G9YK08	321.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0059727_1	861450.HMPREF0080_02017	321.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0059727_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0059727_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0059727_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0059727_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059727_2	1005994.GTGU_01419	73.6	6.67e-16	N/A	N/A
structural_annotation	UHGV-0059727_4	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0059727_5	K22299	60.3	4.6e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0059727_5	phrog_8	80.4	3e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0059727_5	UniRef90_UPI00047E223F	110.0	1.26e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0059727_5	340099.Teth39_0032	97.1	3.52e-24	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0059727_5	retron_type_VI_hth_cluster2_1	46.0	0.0000000000012	N/A	Retron
Pfam	UHGV-0059727_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0059727_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0059727_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0059727_6	K07729	68.0	2.1e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0059727_6	phrog_8	42.8	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0059727_6	UniRef90_UPI0010FD1F0E	80.1	2.27e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0059727_6	997350.HMPREF9129_1690	69.7	0.00000000000000395	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0059727_6	retron_type_VI_hth_cluster2_1	41.3	0.000000000049	N/A	Retron
Pfam	UHGV-0059727_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0059727_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0059727_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_7	phrog_2657	154.2	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0059727_7	UniRef90_UPI001032BCDE	355.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0059727_7	1089548.KI783301_gene2640	288.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0059727_7	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0059727_7	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0059727_7	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0059727_7	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_8	phrog_17280	42.8	0.0000000000095	N/A	unknown function
PHROG	UHGV-0059727_12	phrog_7338	41.2	0.000000000019	N/A	unknown function
UniRef90	UHGV-0059727_12	UniRef90_A0A1G6KQV8	72.0	0.0000000000000113	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-0059727_12	273068.TTE2123	50.1	0.000000963	Excisionase from transposon Tn916	N/A
structural_annotation	UHGV-0059727_12	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_16	phrog_3292	46.1	0.00000000000069	N/A	unknown function
UniRef90	UHGV-0059727_16	UniRef90_A0A412X6L4	145.0	2.94273e-44	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0059727_16	679201.HMPREF9334_01266	88.6	1.42e-22	KTSC domain	N/A
Pfam	UHGV-0059727_16	PF13619	N/A	N/A	KTSC domain	KTSC
structural_annotation	UHGV-0059727_16	PF13619	N/A	N/A	N/A	N/A
KOfam	UHGV-0059727_17	K22299	45.0	0.0000000000024	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0059727_17	UniRef90_A0A412X6A8	105.0	6.07e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0059727_17	1173023.KE650771_gene1274	46.2	0.00000653	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0059727_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0059727_17	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0059727_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_19	phrog_253	116.5	2.2e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059727_19	UniRef90_UPI001C3A3B51	123.0	7.41e-33	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0059727_19	699218.HMPREF0889_0310	122.0	2.22e-33	Siphovirus Gp157	N/A
Pfam	UHGV-0059727_19	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0059727_19	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_20	phrog_7792	115.3	4.8e-34	N/A	unknown function
UniRef90	UHGV-0059727_20	UniRef90_UPI001D07B780	166.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0059727_20	1485543.JMME01000021_gene803	90.5	6.14e-20	N/A	N/A
structural_annotation	UHGV-0059727_20	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_21	phrog_72	66.7	3.3e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059727_21	UniRef90_A0A8D9PDS2	110.0	1.96e-27	NinB protein	N/A
eggNOG-mapper	UHGV-0059727_21	508419.F8J186_9CAUD	100.0	3.57e-24	N/A	N/A
PHROG	UHGV-0059727_22	phrog_7566	90.8	9.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0059727_22	1280698.AUJS01000007_gene1020	70.5	0.0000000000000224	N/A	N/A
PHROG	UHGV-0059727_23	phrog_11233	141.8	4.40008e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059727_23	UniRef90_UPI001E488EAA	98.2	1.98e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0059727_23	1298920.KI911353_gene2714	143.0	2.85e-38	DnaD domain protein	N/A
COG	UHGV-0059727_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0059727_23	PF07106,TIGR01610,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0059727_25	K21919	122.5	3.3e-36	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0059727_25	phrog_923	127.2	4.5e-38	N/A	unknown function
UniRef90	UHGV-0059727_25	UniRef90_A0A412X6I1	180.0	0	Pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0059727_25	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0059727_25	PF13599,NF033086,COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0059727_26	NF011854	N/A	N/A	N/A	N/A
KOfam	UHGV-0059727_27	K00571	120.7	1.7e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0059727_27	phrog_67	101.2	5.4e-31	DNA methyltransferase	other
UniRef90	UHGV-0059727_27	UniRef90_A0A412X698	536.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0059727_27	749222.Nitsa_1817	382.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0059727_27	MTase_II_00157	99.7	3.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0059727_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0059727_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0059727_27	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_29	phrog_190	132.7	2e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059727_29	UniRef90_UPI000F0C6FA4	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059727_29	1347392.CCEZ01000043_gene417	106.0	1.34e-27	N/A	N/A
Pfam	UHGV-0059727_29	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0059727_29	PF06356,NF033179	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059727_34	936573.HMPREF1147_1316	55.1	0.00000000395	crossover junction endodeoxyribonuclease RusA	N/A
COG	UHGV-0059727_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0059727_35	phrog_11227	172.6	0	protease	other
UniRef90	UHGV-0059727_35	UniRef90_A0A3C0IT61	107.0	3.02e-27	Membrane protease subunit	N/A
eggNOG-mapper	UHGV-0059727_35	716544.wcw_0668	95.9	2.8e-23	N/A	N/A
KOfam	UHGV-0059727_36	K03111	146.7	2.39622e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0059727_36	phrog_44	146.2	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0059727_36	UniRef90_UPI000F0C363F	269.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0059727_36	1262914.BN533_00181	199.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0059727_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0059727_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0059727_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0059727_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0059727_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0059727_38	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-0059727_38	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_39	phrog_36	80.5	2.5e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0059727_39	UniRef90_A0A7X2XHL2	259.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059727_39	994573.T472_0214010	62.8	0.000000000134	sigma factor activity	N/A
Pfam	UHGV-0059727_39	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0059727_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0059727_39	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0059727_40	1391647.AVSV01000003_gene1800	74.3	5.15e-16	N/A	N/A
KOfam	UHGV-0059727_41	K07474	117.2	2.8e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0059727_41	phrog_51	129.6	1.6e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0059727_41	UniRef90_UPI0018D50C70	259.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0059727_41	1280689.AUJC01000003_gene961	143.0	3.00018e-42	Terminase small subunit	N/A
Pfam	UHGV-0059727_41	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0059727_41	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0059727_41	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_42	phrog_5902	220.5	0	N/A	unknown function
UniRef90	UHGV-0059727_42	UniRef90_UPI001032D579	987.0	0	terminase	N/A
eggNOG-mapper	UHGV-0059727_42	1200557.JHWV01000001_gene277	488.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0059727_42	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0059727_42	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_44	phrog_332	284.1	0	head-tail adaptor	connector
UniRef90	UHGV-0059727_44	UniRef90_UPI0010329B07	1086.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0059727_44	568816.Acin_1834	234.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0059727_44	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0059727_44	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_45	phrog_528	55.7	5.8e-16	N/A	unknown function
PHROG	UHGV-0059727_47	phrog_212	91.0	0	major head protein	head and packaging
UniRef90	UHGV-0059727_47	UniRef90_A0A077DE24	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0059727_47	520999.PROVALCAL_01883	225.0	0	N/A	N/A
Pfam	UHGV-0059727_47	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0059727_47	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_50	phrog_394	97.1	1.7e-28	tail protein	tail
eggNOG-mapper	UHGV-0059727_50	883080.HMPREF9697_04026	56.2	0.000000526	N/A	N/A
structural_annotation	UHGV-0059727_50	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_51	phrog_376	125.5	3.8e-37	tail protein	tail
eggNOG-mapper	UHGV-0059727_51	76869.PputGB1_1755	78.6	0.000000000000213	N/A	N/A
PHROG	UHGV-0059727_52	phrog_376	331.7	0	tail protein	tail
UniRef90	UHGV-0059727_52	UniRef90_A0A6H1Q5T7	180.0	1.4013e-45	Tail tubular protein B	N/A
eggNOG-mapper	UHGV-0059727_52	568816.Acin_1828	286.0	0	N/A	N/A
structural_annotation	UHGV-0059727_52	PF04053,PF13157,MF_03056,NF038015,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0059727_53	phrog_308	42.4	0.000000000012	internal virion protein	head and packaging

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0059727	Yes	27,748	40	56	1