vOTU vOTU-126214

vOTU: vOTU-126214

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-126214
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00494 → vOTU-126214
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0119373
Biosample ID	SAMEA4378313
Genome length (bp)	24,529 bps
CheckV completeness	61.43% (Medium-quality)
CDS count	32
CDS density	95.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum	Total connections	85	Host agreement	97.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_G → Eubacterium_G ventriosum	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0119373_1	UniRef90_A0A373VU48	143.0	1.28e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0119373_1	140626.JHWB01000009_gene1336	54.3	0.000000122	sequence-specific DNA binding	N/A
Pfam	UHGV-0119373_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0119373_1	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
UniRef90	UHGV-0119373_3	UniRef90_A0A1Q9J4Y8	87.4	1.81e-18	HTH cro/C1-type domain-containing protein	N/A
KOfam	UHGV-0119373_4	K01447	101.8	9.2e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0119373_4	phrog_670	118.1	1.1e-34	endolysin	lysis
UniRef90	UHGV-0119373_4	UniRef90_A0A352SK06	184.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0119373_4	1042156.CXIVA_01560	152.0	1.05097e-43	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0119373_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0119373_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0119373_4	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_5	phrog_199	66.2	3.9e-19	holin	lysis
UniRef90	UHGV-0119373_5	UniRef90_A0A373VSF9	242.0	0	Holin	N/A
eggNOG-mapper	UHGV-0119373_5	411462.DORLON_00766	180.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0119373_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0119373_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0119373_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0119373_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0119373_6	1123075.AUDP01000020_gene1530	84.0	0.0000000000000108	Transposase	N/A
COG	UHGV-0119373_6	COG4372	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_8	phrog_16164	43.4	0.0000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0119373_8	476272.RUMHYD_00002	110.0	1.15e-21	N/A	N/A
PHROG	UHGV-0119373_9	phrog_6616	119.9	1.3e-35	tail protein	tail
eggNOG-mapper	UHGV-0119373_9	1232453.BAIF02000058_gene1641	162.0	2.09004e-41	Phage minor structural protein	N/A
COG	UHGV-0119373_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0119373_9	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_10	phrog_1194	61.3	1.4e-17	N/A	unknown function
UniRef90	UHGV-0119373_10	UniRef90_R5Z572	106.0	5.29e-28	Putative phage protein	N/A
eggNOG-mapper	UHGV-0119373_10	877414.ATWA01000001_gene917	77.0	1.48e-16	N/A	N/A
structural_annotation	UHGV-0119373_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0119373_11	K20282	41.3	0.0000000000058	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0119373_11	phrog_1535	160.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0119373_11	UniRef90_A0A173W8C4	372.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0119373_11	1121333.JMLH01000047_gene1009	75.9	0.0000000000512	N/A	N/A
structural_annotation	UHGV-0119373_13	PF11836	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119373_14	UniRef90_R5YR40	236.0	0	Major tail protein putative	N/A
eggNOG-mapper	UHGV-0119373_14	1499683.CCFF01000014_gene3903	72.0	0.0000000000000628	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0119373_14	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0119373_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_15	phrog_78	41.7	0.000000000018	tail terminator	connector
structural_annotation	UHGV-0119373_15	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_16	phrog_5	100.1	2e-29	tail completion or Neck1 protein	connector
UniRef90	UHGV-0119373_16	UniRef90_R5ZK28	220.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0119373_16	1280692.AUJL01000025_gene2076	107.0	1.48e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0119373_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0119373_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0119373_16	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119373_17	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-0119373_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0119373_18	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_19	phrog_267	179.8	0	major head protein	head and packaging
UniRef90	UHGV-0119373_19	UniRef90_A0A417IN35	410.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0119373_19	1504823.CCMM01000008_gene1041	410.0	0	P22 coat protein-protein 5 domain protein	N/A
Pfam	UHGV-0119373_19	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0119373_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_20	phrog_172	138.1	6.59998e-41	head scaffolding protein	head and packaging
UniRef90	UHGV-0119373_20	UniRef90_UPI000F53BD28	132.0	2.67e-35	N/A	N/A
eggNOG-mapper	UHGV-0119373_20	936154.STP_1289	68.6	0.0000000000117	N/A	N/A
Pfam	UHGV-0119373_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0119373_20	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_21	phrog_115	334.4	0	minor head protein	head and packaging
UniRef90	UHGV-0119373_21	UniRef90_R5YXK3	538.0	0	Phage head morphogenesis protein SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0119373_21	1209989.TepiRe1_1146	265.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0119373_21	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0119373_21	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0119373_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119373_21	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_22	phrog_64	341.9	0	portal protein	head and packaging
UniRef90	UHGV-0119373_22	UniRef90_R5YR52	788.0	0	Phage portal protein SPP1 family	N/A
eggNOG-mapper	UHGV-0119373_22	877414.ATWA01000001_gene907	374.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0119373_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0119373_22	TIGR01538.1	N/A	N/A	phage portal protein	N/A
KOfam	UHGV-0119373_23	K06909	309.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0119373_23	phrog_3717	259.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0119373_23	UniRef90_A0A173W6A0	712.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0119373_23	1256908.HMPREF0373_00486	558.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0119373_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0119373_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0119373_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0119373_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0119373_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_24	phrog_2412	68.5	1e-19	N/A	unknown function
UniRef90	UHGV-0119373_24	UniRef90_UPI001C38E948	93.2	4.58e-22	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0119373_24	1125712.HMPREF1316_1524	62.0	0.000000000148	N/A	N/A
structural_annotation	UHGV-0119373_24	PF18932	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119373_25	PF15887,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_28	phrog_940	350.3	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119373_28	UniRef90_R5YPA6	585.0	0	ParB-like protein	N/A
eggNOG-mapper	UHGV-0119373_28	1232449.BAHV02000018_gene1534	338.0	0	N/A	N/A
PADLOC	UHGV-0119373_28	MTase_II_00015	87.5	2.1e-25	Type II methyltransferase	RM
Pfam	UHGV-0119373_28	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0119373_28	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0119373_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0119373_28	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_29	phrog_36	60.1	5.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0119373_29	UniRef90_U7UBY9	70.5	0.000000000000908	PF07374 family protein	N/A
eggNOG-mapper	UHGV-0119373_29	1111454.HMPREF1250_0009	70.5	0.000000000000152	N/A	N/A
structural_annotation	UHGV-0119373_29	PF07374,MF_00674,TIGR02984,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_30	phrog_918	57.3	2.4e-16	N/A	unknown function
UniRef90	UHGV-0119373_30	UniRef90_UPI001C015439	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0119373_30	411902.CLOBOL_05677	47.8	0.00000657	N/A	N/A
Pfam	UHGV-0119373_30	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0119373_30	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0119373_32	phrog_20593	66.1	9.5e-20	N/A	unknown function
UniRef90	UHGV-0119373_32	UniRef90_UPI001C00A328	61.2	0.00000000133	N/A	N/A
eggNOG-mapper	UHGV-0119373_32	483218.BACPEC_01161	63.2	0.00000000019	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0119373	Yes	24,529	37	61	1