vOTU vOTU-126419

vOTU: vOTU-126419

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-126419
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-01174 → vGENUS-01697 → vOTU-126419
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0005228
Biosample ID	N/A
Genome length (bp)	29,867 bps
CheckV completeness	57.14% (Medium-quality)
CDS count	46
CDS density	94.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	13	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0005228_1	K01520	172.9	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0005228_1	phrog_135	153.5	1.4013e-45	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005228_1	UniRef90_UPI0012BC60BE	144.0	7.36943e-42	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0005228_1	865861.AZSU01000003_gene1738	137.0	1.02e-39	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0005228_1	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0005228_1	NF001862.0	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0005228_1	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0005228_1	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0005228_2	K07273	148.8	5.04467e-44	acm; lysozyme	N/A
PHROG	UHGV-0005228_2	phrog_291	123.2	2e-36	endolysin	lysis
UniRef90	UHGV-0005228_2	UniRef90_A0A1Q6T343	500.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005228_2	411471.SUBVAR_05145	209.0	0	heme binding	N/A
Pfam	UHGV-0005228_2	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0005228_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0005228_2	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0005228_2	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005228_3	PF16640	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_5	phrog_134	50.6	0.000000000000026	N/A	unknown function
UniRef90	UHGV-0005228_5	UniRef90_A0A7X8AV80	48.1	0.00000193	XkdX family protein	N/A
Pfam	UHGV-0005228_5	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0005228_5	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_6	phrog_19111	48.5	0.000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-0005228_6	1469948.JPNB01000001_gene535	70.1	0.0000000000228	domain, Protein	N/A
COG	UHGV-0005228_6	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
KOfam	UHGV-0005228_8	K06909	321.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005228_8	phrog_2	119.7	4e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0005228_8	UniRef90_A0A845R3T8	558.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0005228_8	1443122.Z958_p0035	525.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0005228_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0005228_8	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0005228_8	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0005228_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0005228_8	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_9	phrog_8680	202.1	0	N/A	unknown function
UniRef90	UHGV-0005228_9	UniRef90_A0A385Q2V2	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005228_9	411470.RUMGNA_02208	142.0	2.44e-39	N/A	N/A
Pfam	UHGV-0005228_9	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0005228_9	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_12	phrog_64	122.6	2.4e-36	portal protein	head and packaging
UniRef90	UHGV-0005228_12	UniRef90_UPI0008331C88	448.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0005228_12	1121342.AUCO01000012_gene1700	153.0	5.25e-38	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0005228_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0005228_12	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_13	phrog_21401	199.6	0	pilot protein for DNA ejection	tail
UniRef90	UHGV-0005228_13	UniRef90_A0A1C6BCQ4	225.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0005228_13	1121342.AUCO01000012_gene1699	220.0	0	N/A	N/A
NCBIFam	UHGV-0005228_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
PHROG	UHGV-0005228_15	phrog_2303	127.4	1.1e-37	head scaffolding protein	head and packaging
UniRef90	UHGV-0005228_15	UniRef90_A0A0U9HGC9	71.2	0.0000000000153	N/A	N/A
eggNOG-mapper	UHGV-0005228_15	764299.STRIC_2530	84.7	2.34e-17	N/A	N/A
structural_annotation	UHGV-0005228_15	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_16	phrog_909	57.7	1.9e-16	major head protein	head and packaging
structural_annotation	UHGV-0005228_16	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_17	phrog_29	256.0	0	major head protein	head and packaging
UniRef90	UHGV-0005228_17	UniRef90_A0A843GQH0	401.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0005228_17	1296659.S5MNB6_9CAUD	333.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0005228_17	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0005228_17	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_19	phrog_4020	45.2	0.0000000000015	N/A	unknown function
structural_annotation	UHGV-0005228_20	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005228_21	UniRef90_UPI00164BA869	72.4	0.0000000000000451	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0005228_21	59241.E7DNB1_BPDP1	78.2	4.5e-17	N/A	N/A
structural_annotation	UHGV-0005228_21	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_22	phrog_7585	85.6	6.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0005228_22	748727.CLJU_c31260	81.6	3.97e-18	N/A	N/A
structural_annotation	UHGV-0005228_22	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_23	phrog_6686	108.3	4e-32	tail tube protein	tail
UniRef90	UHGV-0005228_23	UniRef90_A0A1C6KI12	152.0	4.84008e-42	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0005228_23	697281.Mahau_0063	56.6	0.000000302	N/A	N/A
structural_annotation	UHGV-0005228_23	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_24	phrog_6280	128.1	4.6e-38	N/A	unknown function
UniRef90	UHGV-0005228_24	UniRef90_UPI001E3BEC7F	112.0	5.49e-29	esterase	N/A
eggNOG-mapper	UHGV-0005228_24	1443125.Z962_12410	103.0	1.31e-26	N/A	N/A
PHROG	UHGV-0005228_25	phrog_1533	370.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0005228_25	UniRef90_A0A374E9U4	343.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0005228_25	397288.C806_00771	346.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0005228_25	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0005228_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0005228_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0005228_25	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_26	phrog_36410	123.5	7.1e-37	N/A	unknown function
UniRef90	UHGV-0005228_26	UniRef90_A0A7X9C3E1	266.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0005228_26	649747.HMPREF0083_00649	166.0	0	Phage tail protein	N/A
Pfam	UHGV-0005228_26	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0005228_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0005228_26	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_27	phrog_538	240.3	0	minor tail protein	tail
UniRef90	UHGV-0005228_27	UniRef90_UPI00136AC3EA	219.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0005228_27	768704.Desmer_4453	224.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0005228_27	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0005228_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_28	phrog_1220	255.7	0	head protein	head and packaging
UniRef90	UHGV-0005228_28	UniRef90_UPI000C7676C6	196.0	0	methyl-accepting chemotaxis protein	N/A
eggNOG-mapper	UHGV-0005228_28	1033737.CAEV01000028_gene283	212.0	0	N/A	N/A
structural_annotation	UHGV-0005228_28	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_29	phrog_297	42.1	0.000000000011	holin	lysis
UniRef90	UHGV-0005228_29	UniRef90_UPI0004E0F2E9	108.0	5.38e-29	phage holin	N/A
eggNOG-mapper	UHGV-0005228_29	1408437.JNJN01000039_gene392	95.5	7.67e-25	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0005228_29	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0005228_29	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0005228_29	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005228_29	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_30	phrog_937	40.8	0.000000000019	hemolysin	other
structural_annotation	UHGV-0005228_32	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_34	phrog_21718	41.3	0.000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0005228_36	476272.RUMHYD_01770	87.8	1.59e-18	N/A	N/A
PHROG	UHGV-0005228_37	phrog_20016	62.2	6.9e-18	N/A	unknown function
UniRef90	UHGV-0005228_37	UniRef90_A0A395WF88	72.0	0.000000000000177	BclA_C domain-containing protein	N/A
Pfam	UHGV-0005228_37	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0005228_37	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005228_39	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
KOfam	UHGV-0005228_41	K14440	75.4	4.2e-31	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0005228_41	phrog_62	263.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005228_41	UniRef90_A0A1V5E5D6	277.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0005228_41	887325.HMPREF0381_0366	198.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0005228_41	ZorD1_00007	51.8	0.0000000000000094	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0005228_41	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0005228_41	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0005228_41	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0005228_41	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0005228_42	phrog_1315	53.2	0.0000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0005228_42	1178540.BA70_19260	48.1	0.0000093	N/A	N/A
eggNOG-mapper	UHGV-0005228_43	749222.Nitsa_0220	51.6	0.000000763	VRR_NUC	N/A
COG	UHGV-0005228_43	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
PHROG	UHGV-0005228_44	phrog_24386	107.3	1.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0005228_44	1280694.AUJQ01000013_gene1409	115.0	2.57e-31	phosphatase activity	N/A
COG	UHGV-0005228_44	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
KOfam	UHGV-0005228_46	K00560	157.3	0	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-0005228_46	phrog_5131	177.4	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005228_46	UniRef90_A0A4Y5FGW2	179.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-0005228_46	1207058.L53_12995	154.0	5.79997e-42	Thymidylate synthase	N/A
Pfam	UHGV-0005228_46	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-0005228_46	COG0207	N/A	N/A	Thymidylate synthase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0005228	Yes	29,867	44	57	1