vOTU vOTU-126948

vOTU: vOTU-126948

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-126948
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-05785 → vGENUS-13335 → vOTU-126948
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000437735
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0028098
Biosample ID	N/A
Genome length (bp)	46,812 bps
CheckV completeness	75.79% (Medium-quality)
CDS count	80
CDS density	86.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000437735	Total connections	30	Host agreement	86.67
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0028098_1	phrog_4433	170.0	0	N/A	unknown function
UniRef90	UHGV-0028098_1	UniRef90_A0A6M5C839	101.0	8.84e-24	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0028098_1	33035.JPJF01000122_gene2458	134.0	6.74e-36	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0028098_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0028098_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_2	phrog_2289	44.5	0.0000000000031	helicase loader	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0028098_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-0028098_3	phrog_1163	117.2	1.10001e-40	N/A	unknown function
UniRef90	UHGV-0028098_3	UniRef90_A0A443IMB0	95.9	2.17e-20	Replication protein	N/A
eggNOG-mapper	UHGV-0028098_3	372457.A7DYC7_9CAUD	97.1	1.63e-21	calcium ion binding	N/A
Pfam	UHGV-0028098_3	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0028098_3	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0028098_3	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
eggNOG-mapper	UHGV-0028098_5	742733.HMPREF9469_01846	133.0	2.03e-38	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0028098_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0028098_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_6	phrog_1227	217.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028098_6	UniRef90_UPI001EE8242C	274.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0028098_6	861454.HMPREF9099_00347	252.0	0	N/A	N/A
Pfam	UHGV-0028098_6	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0028098_6	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0028098_6	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0028098_7	K07455	171.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0028098_7	phrog_148	154.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028098_7	UniRef90_UPI001B199585	246.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0028098_7	431943.CKL_0416	239.0	0	RecT family	N/A
Pfam	UHGV-0028098_7	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0028098_7	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0028098_7	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
PHROG	UHGV-0028098_14	phrog_478	124.6	4.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0028098_14	UniRef90_R6E548	122.0	2.25e-33	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0028098_14	1111121.HMPREF1247_0834	94.7	3.65e-23	N/A	N/A
UniRef90	UHGV-0028098_16	UniRef90_UPI00156F8596	111.0	1.24e-29	N/A	N/A
Pfam	UHGV-0028098_16	PF14190	N/A	N/A	N/A	DUF4313
structural_annotation	UHGV-0028098_16	PF14190	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_19	phrog_14105	265.5	0	N/A	unknown function
UniRef90	UHGV-0028098_19	UniRef90_UPI0018A0DC22	333.0	0	PPE family protein	N/A
eggNOG-mapper	UHGV-0028098_19	742740.HMPREF9474_02379	221.0	0	dextransucrase activity	N/A
Pfam	UHGV-0028098_19	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0028098_19	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0028098_22	K07741	70.3	6.5e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-0028098_22	phrog_25289	97.1	6.2e-29	N/A	unknown function
UniRef90	UHGV-0028098_22	UniRef90_A0A564SBT3	285.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-0028098_22	411470.RUMGNA_02184	252.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0028098_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0028098_22	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0028098_22	PF03374,PF09669,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028098_23	UniRef90_UPI001D05E6AC	52.8	0.0000000208	antA/AntB antirepressor family protein	N/A
eggNOG-mapper	UHGV-0028098_23	397291.C804_01081	47.4	0.00000629	AntA/AntB antirepressor	N/A
COG	UHGV-0028098_23	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
PHROG	UHGV-0028098_24	phrog_8	45.8	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028098_24	UniRef90_UPI001898A404	100.0	1.49e-26	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028098_24	1304866.K413DRAFT_0833	85.9	1.26e-21	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0028098_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0028098_24	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_25	phrog_8	44.7	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028098_25	UniRef90_UPI001BBA85B7	98.2	1.06e-24	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028098_25	1304866.K413DRAFT_0834	62.4	0.0000000000191	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0028098_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028098_25	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0028098_29	UniRef90_A0A1Q6KSP3	247.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0028098_29	742765.HMPREF9457_02739	212.0	0	N/A	N/A
structural_annotation	UHGV-0028098_29	PF12844,PF16452,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028098_30	411902.CLOBOL_05642	53.1	0.00000512	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
COG	UHGV-0028098_30	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0028098_30	PF00877,NF008096,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_32	phrog_32822	56.3	9.2e-17	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0028098_32	1158607.UAU_01772	75.1	0.0000000000489	gp58-like protein	N/A
COG	UHGV-0028098_32	COG0845	N/A	N/A	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	N/A
PHROG	UHGV-0028098_34	phrog_1194	68.3	9.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0028098_34	1232453.BAIF02000058_gene1638	82.0	2.55e-18	N/A	N/A
structural_annotation	UHGV-0028098_34	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_35	phrog_28918	270.7	0	N/A	unknown function
UniRef90	UHGV-0028098_35	UniRef90_UPI001D06F8E3	360.0	0	methyl-accepting chemotaxis protein	N/A
eggNOG-mapper	UHGV-0028098_35	1298920.KI911353_gene2649	313.0	0	tape measure	N/A
COG	UHGV-0028098_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
UniRef90	UHGV-0028098_38	UniRef90_A0A8D9PGN2	85.5	5.16e-18	Major tail protein	N/A
structural_annotation	UHGV-0028098_38	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028098_39	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028098_40	1232453.BAIF02000058_gene1631	87.0	6.26e-19	N/A	N/A
eggNOG-mapper	UHGV-0028098_41	1298920.KI911353_gene2656	53.9	0.000000404	N/A	N/A
structural_annotation	UHGV-0028098_41	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_42	phrog_443	55.7	0.0000000000000014	holin	lysis
UniRef90	UHGV-0028098_42	UniRef90_A0A1M6RHE6	88.2	1.38e-21	Holin, r1t family	N/A
eggNOG-mapper	UHGV-0028098_42	1469948.JPNB01000002_gene3855	82.0	6.87e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0028098_42	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0028098_42	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_43	phrog_1863	52.0	0.0000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0028098_43	1232452.BAIB02000007_gene1606	63.2	0.000000000031	N/A	N/A
PHROG	UHGV-0028098_46	phrog_29	202.1	0	major head protein	head and packaging
UniRef90	UHGV-0028098_46	UniRef90_A0A2K9P3U0	390.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0028098_46	1232443.BAIA02000078_gene29	338.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0028098_46	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0028098_46	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_47	phrog_909	74.5	1.3e-21	major head protein	head and packaging
UniRef90	UHGV-0028098_47	UniRef90_K1TUL5	80.5	2.86e-17	N/A	N/A
eggNOG-mapper	UHGV-0028098_47	1497679.EP56_02915	84.3	9.9e-20	N/A	N/A
structural_annotation	UHGV-0028098_47	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_49	phrog_115	46.3	0.00000000000069	minor head protein	head and packaging
eggNOG-mapper	UHGV-0028098_49	1121451.DESAM_10288	60.1	0.00000000244	head morphogenesis protein, SPP1 gp7	N/A
Pfam	UHGV-0028098_49	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0028098_49	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0028098_49	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028098_49	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_50	phrog_64	156.2	0	portal protein	head and packaging
UniRef90	UHGV-0028098_50	UniRef90_R6CA99	572.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0028098_50	1298920.KI911353_gene2663	429.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0028098_50	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0028098_50	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028098_51	PF10122,NF041070,COG4416	N/A	N/A	N/A	N/A
KOfam	UHGV-0028098_52	K15529	40.3	0.000000000056	POA1; ADP-ribose 1''-phosphate phosphatase [EC:3.1.3.84]	N/A
PHROG	UHGV-0028098_52	phrog_335	131.2	6.9e-39	phosphatase	other
UniRef90	UHGV-0028098_52	UniRef90_A0A374LF98	108.0	4.66e-27	Appr-1-p processing protein	N/A
eggNOG-mapper	UHGV-0028098_52	315750.BPUM_1656	103.0	2.77e-26	Macro domain	N/A
PADLOC	UHGV-0028098_52	darG	78.9	1.4e-22	N/A	N/A
Pfam	UHGV-0028098_52	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-0028098_52	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0028098_52	PF05028,MF_01205,NF001666,COG2110	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_53	phrog_36	45.0	0.000000000002	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0028098_53	397290.C810_01391	123.0	7.54e-34	N/A	N/A
structural_annotation	UHGV-0028098_53	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_54	phrog_38	143.9	2.00386e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0028098_54	UniRef90_A0A4Q5C857	650.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0028098_54	1298920.KI911353_gene2682	556.0	0	TIGRFAM Phage	N/A
COG	UHGV-0028098_54	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028098_54	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0028098_59	phrog_38044	164.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0028098_59	762982.HMPREF9442_01191	143.0	8.31e-32	cellulase activity	N/A
Pfam	UHGV-0028098_59	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0028098_59	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0028098_60	phrog_918	91.4	6e-27	N/A	unknown function
UniRef90	UHGV-0028098_60	UniRef90_UPI001D092FF5	108.0	3.85e-29	N/A	N/A
eggNOG-mapper	UHGV-0028098_60	1256908.HMPREF0373_00480	110.0	1.12e-30	N/A	N/A
Pfam	UHGV-0028098_60	PF19791	N/A	N/A	N/A	DUF6275
KOfam	UHGV-0028098_61	K03111	135.2	7.29999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0028098_61	phrog_44	140.1	1.40004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028098_61	UniRef90_A0A7X2N4W4	177.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0028098_61	679200.HMPREF9333_00481	160.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0028098_61	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0028098_61	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0028098_61	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0028098_61	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0028098_61	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028098_67	PF09392,NF011854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028098_72	UniRef90_A0A358PSC0	99.4	7.91e-26	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028098_72	411470.RUMGNA_00075	84.0	1.65e-20	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0028098_72	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0028098_72	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028098_74	UniRef90_A0A3E4LX24	79.3	6.75e-17	XRE family transcriptional regulator	N/A
PHROG	UHGV-0028098_77	phrog_1233	50.9	0.000000000000026	N/A	unknown function
UniRef90	UHGV-0028098_77	UniRef90_A0A345BPX6	102.0	5.52e-26	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-0028098_77	397290.C810_01336	115.0	6.48e-32	N/A	N/A
eggNOG-mapper	UHGV-0028098_78	658655.HMPREF0988_00915	125.0	4.7e-33	N/A	N/A
PHROG	UHGV-0028098_80	phrog_16490	165.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0028098_80	397290.C810_01328	191.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0028098	Yes	46,812	44	76	1